Repeat Size (AT%) | Nymphaea(reference genome) | Amborella | Nuphar | Calycanthus | Triticum | Ranunculus | Arabidopsis | Nicotiana | Location |
---|---|---|---|---|---|---|---|---|---|
49(64) | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | psaA, psaB |
43(61) | 4 | 4 | 4 | 4 | 0 | 4 | 2 | 2 | ycf2 |
42(51) | 5 | 6 | 7 | 7 | 5 | 5 | 6 | 7 | intron ycf3, intron rpoC1, IGS psbH:petB, IGS petD:petB, IGS rpl16:rps3, IGS trnV:rps12 3' |
40(54) | 11 | 10 | 11 | 11 | 11 | 7 | 9 | 10 | intron ycf3, intron ndhB, IGS trnV:rps12 3', IGS rpl16:rps3, IGS psbH:petB, IGS rps12 3':rps7 |
37(39) | 2 | 2 | 2 | 2 | 1 | 2 | 2 | 2 | IGS trnS:trnR |
36(51) | 3 | 2 | 3 | 2 | 2 | 3 | 2 | 3 | trnV, trnA |
35(75) | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | IGS rps12 5':clpP |
35(47) | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | trnS |
35(100) | 3 | 2 | 4 | 1 | 0 | 2 | 4 | 1 | intron trnL, IGS ndhC:trnV |
34(91) | 2 | 2 | 2 | 2 | 2 | 1 | 2 | 2 | trnfM, trnP |
34(86) | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | IGS atpH:atpI, IGS trnS:trnR |
34(54) | 4 | 1 | 1 | 0 | 1 | 0 | 4 | 0 | intron trnL, IGS trnE:trnT |
33(59) | 2 | 3 | 2 | 2 | 3 | 2 | 3 | 2 | intron atpF, IGS trnS:trnR |
33(85) | 2 | 2 | 1 | 1 | 0 | 1 | 1 | 2 | intron clpP, rpoC2 |
33(47) | 4 | 4 | 4 | 2 | 4 | 4 | 4 | 4 | trnI, trnN |
32(79) | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | IGS psbA:matK |
32(94) | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | IGS trnP:psaJ |
32(58) | 3 | 3 | 3 | 3 | 4 | 3 | 3 | 3 | trnT, trnM |
32(64) | 2 | 2 | 2 | 2 | 1 | 2 | 0 | 2 | psaA, psaB |
32(97) | 3 | 1 | 0 | 1 | 1 | 1 | 4 | 1 | intron trnL, IGS ndhC:trnV |
32(69) | 2 | 0 | 2 | 1 | 1 | 1 | 1 | 2 | intron ndhA, rpoA |
31(66) | 4 | 2 | 4 | 4 | 0 | 6 | 2 | 4 | ycf2 |
31(66) | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | IGS trnS:trnR, trnG |
31(56) | 2 | 1 | 2 | 2 | 1 | 2 | 2 | 2 | Intron ndhA, IGS rpl16:rps3 |
31(59) | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | trnT |
31(53) | 2 | 1 | 2 | 1 | 3 | 1 | 1 | 3 | intron ycf3, intron ndhA |
31(66) | 4 | 4 | 4 | 4 | 0 | 2 | 4 | 4 | ycf2 |
31(75) | 2 | 2 | 2 | 2 | 0 | 2 | 1 | 2 | intron ndhB |
31(88) | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | IGS rps16:trnQ, cemA |
31(84) | 2 | 1 | 2 | 1 | 0 | 1 | 0 | 0 | intron ndhB, IGS trnT:psbD |
31(34) | 2 | 2 | 2 | 1 | 0 | 2 | 1 | 1 | psaB, psaA |
31(56) | 2 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | psaB, psaA |
31(59) | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | IGS rps12 5':clpP |
31(75) | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | intron clpP, intron rps16 |
31(84) | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | IGS rps15:trnN |
30(77) | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | intron ycf3 |
30(52) | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | trnS |
30(71) | 3 | 3 | 3 | 3 | 4 | 4 | 3 | 3 | intron ndhB, IGS trnS:trnR |
30(52) | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 4 | intron ycf3, IGS trnV:rps12 3' |
30(55) | 2 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | IGS petA:psbJ |
30(42) | 4 | 2 | 4 | 2 | 2 | 2 | 2 | 2 | IGS trnV:rps12 3', rrn23 |
30(39) | 4 | 2 | 4 | 2 | 2 | 2 | 2 | 2 | IGS trnV:rps12 3', rrn23 |
30(68) | 2 | 2 | 2 | 1 | 2 | 2 | 2 | 1 | intron ndhA, IGS trnS:trnR |
30(84) | 3 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | rpl23 |
30(68) | 4 | 4 | 4 | 4 | 0 | 4 | 6 | 6 | ycf2 |
30(74) | 4 | 4 | 4 | 6 | 0 | 2 | 8 | 4 | ycf2 |
30(55) | 2 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | IGS trnH:psbA, rpoB |
30(74) | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | IGS psbK:psbI, IGS psbF:psbE |
30(97) | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | IGS atpH:atpI |
30(90) | 2 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | IGS atpH:atpI, IGS psaI:ycf4 |
30(68) | 2 | 1 | 2 | 1 | 0 | 1 | 1 | 0 | IGS accD:psaI, rpoB |
30(74) | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | IGS ycf6:psbM, IGS psaI:ycf4 |
30(68) | 3 | 3 | 3 | 3 | 0 | 3 | 3 | 3 | IGS psbD:psbC, IGS rpl14:rpl16, ycf2 |
30(71) | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 1 | psaB, psaA |
30(55) | 3 | 1 | 3 | 0 | 2 | 3 | 1 | 1 | intron ycf3, IGS trnV:rps12 3' |
30(65) | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | IGS trnS:rps4, IGS rps15:trnN |
30(74) | 2 | 2 | 2 | 2 | 1 | 1 | 2 | 1 | rps4, ndhC |
30(65) | 2 | 1 | 2 | 2 | 0 | 1 | 0 | 2 | ndhK, ndhD |
30(61) | 3 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | intron trnV, IGS trnV:rps12 3' |
30(58) | 2 | 2 | 1 | 0 | 0 | 1 | 1 | 1 | atpE, ndhD |
30(74) | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | IGS petB:petD, IGS rps15:trnN |
30(71) | 4 | 2 | 4 | 1 | 2 | 2 | 4 | 4 | rpl2, ycf2 |
30(52) | 4 | 2 | 4 | 1 | 2 | 2 | 2 | 2 | rpl2, ycf2 |
30(29) | 2 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | IGS trnI:rrn16 |