An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice

Table 2 Promoter motifs identified by ab initio method using the Dragon Motif Builder program with EM1 and EM2 option

Sequence Motif	Location	EM1-threshold	EM2-threshold
TTTTC	Upstream (-1000, -1)	0.875
TGACG	Upstream (-1000, -1)	0.875
GATGA	Upstream (-1000, -1)	0.875
TTGATC	Upstream, downstream (-1000, +350)	0.850
TCCCAT	Upstream (-500, -1)		0.850
CAAACC	Upstream, downstream (-500, +350)	0.850
CAACAA	Upstream (-500, -1)		0.850
CACGTG	Upstream (-500, -1)		0.850
CAACCT	Upstream and downstream	0.850
ATCCGG	Upstream (-1000, -1)	0.875
CTCGC	Upstream (-1000, -1)	0.875
GCGCCGC	Upstream, downstream (-1000, +350)	0.875
AACCAA	Upstream (-1000, -1)		0.850
GCCGCCG	Upstream, downstream (-500, +200)		0.850
GCGAC	Upstream, downstream (-500, +200)	0.875
ACAAAAT	Upstream (-1000, -1)	0.875

ISSN: 1471-2164