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Table 1 The 50 most abundant transcripts, revealed by SAGE analysis, in S. mansoni adult worms.

From: A quantitative view of the transcriptome of Schistosoma mansoni adult-worms using SAGE

  Gene name Tag sequence Number of tags Gene/cluster identification – Accession number Position inside transcript Tag rank
1 S.mansoni eggshell protein (F10) gene actattcggg 1454 gi| 160993| gb| M14309.1| SCMFSPA 50 0
2 S. mansoni pol-polyprotein cctgtaaact 835 gi| 44829167| tpg| DAA04497.1| C200397.1 99 0
3 S.mansoni heat shock protein 86 mRNA gaagaagtgg 640 gi| 161027| gb| J04017.1| SCMHSP86 96 0
4 S. mansoni 14-3-3 protein (Sm14-3-3) mRNA tcatacaaga 588 gi| 790657| gb| U24281.1| SMU24281 95 0
5 Similar to S. japonicum L23a ribosomal protein ccggtgtctc 513 TC13660 97 0
6 No matches agcgtccaaa 472 TC7406 85 0
7 S. mansoni heat shock protein 70 (HSP70) gene aggcaagtgg 464 gi| 161025| gb| L02415.1| SCMHSP70X 67 0
8 S. mansoni (GAPDH) cataatgaag 438 gi| 160994| gb| M92359.1| SCMGAPDH 89 1
9 S. mansoni fructose bisphosphate aldolase mRNA cggctcagga 398 gi| 2598925| gb| AF026805.1| AF026805 72 0
10 Mitochondrial small subunit ribosomal RNA gtagtgcttg 364 AF130787_1459_201 94 0
11 No matches cttttctaaa 349 TC17835 93 0
12 Similar to S. japonicum SJCHGC02196 protein tgttgttcgt 340 TC17184 96 0
13 S.mansoni (Liberia) mRNA for tandem repeat agcaatggaa 319 gi| 454257| emb| Z29960.1| SMTANREP TC7340 20 3
14 Similar to SJCHGC06305 protein (putative piruvate kinase) tgtacgtcat 313 gi| 56757978| gb| AAW27129.1| TC7454 94 2
15 S. mansoni fatty acid binding protein mRNA tatcgttcta 302 gi| 160983| gb| M60895.1| SCMFABP14 89 0
16 Similar to unknown protein S. japonicum (putative S3a ribosomal protein) gcgagtcgaa 293 gi| 56758226| gb| AAW27253.1| TC16783 86 0
17 Similar to S. japonicum SJCHGC00690 protein. Putative beta thymosin taatatgcgc 265 gi| 76161984| gb| AAX30141.2| TC11200 71 0
18 Similar to S. japonicum Sj-Ts1 gtgctcgaag 255 gi| 14581393| gb| AAF98445.1| TC17397 53 0
19 S. mansoni 28 kDa glutathione S-transferase (GST) gene tgactgatct 254 gi| 161010| gb| M98271.1| SCMGSTM 88 1
20 S. mansoni tegumental protein Sm 20.8 mRNA gcacattgtc 252 gi| 2454222| gb| U91941.1| U91941 62 0
21 S. mansoni actin mRNA acatcaacaa 225 gi| 924602| gb| U19945.1| SMU19945 84 0
22 similar S. japonicum (putative ribosomal protein L15) ccttcggtac 225 gi| 29841092| gb| AAP06105.1| TC13745 97 0
23 Similar to SJCHGC09089 S. japonicum (putative ribosomal protein S10) gaggttatgg 215 gi| 56755876| gb| AAW26116.1| TC16990 89 0
24 Similar to S. japonicum clone ZZD545 mRNA sequence ttggaggcaa 211 gi| 28317769| gb| AY223294.1| TC13521 93 0
25 S.mansoni SM22.6 antigen (A12) RNA gagaacacca 198 gi| 161086| gb| M37003.1| SCMSM226 71 0
26 Similar to SJCHGC01209 S. japonicum (putative tetraspanin) gtaaccaatg 193 gi| 56752993| gb| AAW24708.1| TC11060 93 0
27 Similar to S. japonicum (putative hnRNP A2) cagcgtcctt 191 gi| 29841163| gb| AAP06176.1| TC10489 78 3
28 Similar to SJCHGC06078 S. japonicum (putative 40S ribosomal protein) gggattgccg 190 gi| 56758252| gb| AAW27266.1| TC16808 87 0
29 S. mansoni receptor for activated PKC mRNA gtctgctgat 186 gi| 19071248| gb| AF422164.1| 87 0
30 No matches ccaggttgtg 184 TC9014 0 0
31 Similar to S. japonicum HEXBP (putative DNA binding protein) gttatggcca 174 gi| 29841170| gb| AAP06183.1| TC10354 75 0
32 Similar to S.japonicum SJCHGC05715 (putative germinal Histone H4) tggattcttg 168 gi| 56754980| gb| AY813941.1| TC14578 81 0
33 S. mansoni myosin heavy chain (MYH) mRNA gtacttagtg 167 gi| 161043| gb| L01634.1| SCMMYH 97 0
34 S. mansoni lactate dehydrogenase tatgttctct 165 gi| 4099443| gb| U87629.1| SMU87629 87 0
35 NADH dehydrogenase 4 (ND4) gene attttgtttg 159 AF130788_1003_2262 87 0
36 S. mansoni cathepsin L gggtatgaat 159 gi| 473158| emb| Z32529.1| SMCATHL 87 2
37 Similar to S. japonicum (putative 60S acidic ribosomal protein P0) ggattcggtt 155 gi| 29841185| gb| AAP06198.1| TC7332 95 0
38 S. mansoni cDNA clone (putative 60S acidic ribosomal protein P2) ccatcagcct 154 gi| 34701209| gb| CD164545.1| CD164545 CD164545 92 0
39 Similar to S. japonicum putative L10 ribosomal protein gccccttgga 154 TC13587 87 0
40 S. mansoni enolase trans-spliced mRNA tcgttctgat 147 gi| 1002615| gb| U30175.1| SMU30175 84 0
41 Non-available tccccgtaca 145 no_annot   
42 S. mansoni cysteine protease inhibitor (Cys) mRNA cccaccactt 144 gi| 33355622| gb| AY334553.1| 84 0
43 Similar to S. japonicum cDNA clone (putative ribosomal protein L10) tacctaggcc 143 gi| 29841379| gb| AAP06411.1| TC7615 79 0
44 Similar to S. japonicum SJCHGC01239 protein (putative L8 ribosomal protein) gtcgcaaagt 139 gi| 56754665| gb| AAW25518.1| TC7475 59 1
45 S. mansoni NADH dehydrogenase subunit 5 (NU5M) mRNA ggtttagtag 138 gi| 3599492| gb| AF085145.1| AF085145 90 0
46 Non-available tgcgcgcgtg 137 no_annot   
47 Similar to S. japonicum SJCHGC02603 Protein (putative 40S ribosomal protein S27) cacagacagc 134 gi| 60687866| gb| AAX30266.1| TC8025 55 0
48 S. mansoni clone NLSL20 40S rRNA protein homolog mRNA tggtgagggc 130 gi| 2623827| gb| AF030961.1| AF030961 TC13698 46 0
49 Similar to S. japonicum SJCHGC01998 protein (putative 40S ribosomal protein S25) ctctcgagga 128 gi| 76162217| gb| ABA40776.1| TC7478 70 0
50 Similar to S. japonicum SJCHGC00821 protein (putative myosin regulatory light chain 2A) ggagaagaaa 123 gi| 56757579| gb| AAW26951.1| TC7368 3 3