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Table 2 The 10 most abundant contigsa from the Opisthorchis viverrini EST dataset.

From: Gene discovery for the carcinogenic human liver fluke, Opisthorchis viverrini

Contig

ESTs/contig

Closest homologue in GenBank nr (accession no.)

%identities (no. of aa)

Score (Bits)

Closest homologue in dbEST (accession no.)

%identities (no. of aa)

Score (Bits)

OvAE1587

100

vitelline B precursor, O. viverrini (AAL23712)

99% (230)

493

C. sinensis cDNA clone CSAD-01-D02 (AT007557)

92% (225)

524

OvAE1588

77

17 kDa myoglobin, Clonorchis sinensis (AAM18464)

81% (149)

244

C. sinensis cDNA clone CSAD-29-A12 (AT009373)

77% (188)

344

OvAE1585

77

hypothetical protein, C. sinensis (AAM55183)

84% (90)

156

C. sinensis cDNA clone CS30 (AT006763)

84% (100)

199

OvAE1593

41

egg protein, C. sinensis (AAN64160)

89% (253)

389

C. sinensis cDNA clone CSAD-20-B05 (AT008604)

82% (237)

477

OvAE1584

37

hypothetical protein, Macaca fascicularis (BAE73006)

67% (59)

82

SJA_AAF_D11.T3 SJA S. japonicum (CX857852)

85% (94)

183

OvAE1602

21

histone H1, Schistosoma japonicum (AAP06509)

74% (70)

112

C.sinensis cDNA clone CSAD-25-H03 (AT009091)

85% (177)

302

OvAE1607

17

egg protein, C. sinensis (AAN64160)

59% (252)

288

C. sinensis cDNA clone CSAD-01-B01 (AT007532)

82% (252)

493

OvAE1595

16

retrotransposon gag region, Monascus pilosus (ABC24965)

31% (57)b

33

NA

NA

NA

OvAE1608

15

translationally controlled tumor protein, C. sinensis (AAX84199)

98% (169)

306

C. sinensis cDNA clone CSAD-24-E07(AT008979)

92% (122)

228

OvAE1601

11

glutathione-S-transferase, O. viverrini (AAL23713)

98%(213)

429

C. sinensis cDNA clone CSAD-32-E05 (AT009695)

86% (232)

484

  1. aNon-ribosomal sequences only were used in this analysis.
  2. bSequence identity was low but diagnostic motifs of gag were detected over 57 amino acids.