Skip to main content

Advertisement

Table 2 The 10 most abundant contigsa from the Opisthorchis viverrini EST dataset.

From: Gene discovery for the carcinogenic human liver fluke, Opisthorchis viverrini

Contig ESTs/contig Closest homologue in GenBank nr (accession no.) %identities (no. of aa) Score (Bits) Closest homologue in dbEST (accession no.) %identities (no. of aa) Score (Bits)
OvAE1587 100 vitelline B precursor, O. viverrini (AAL23712) 99% (230) 493 C. sinensis cDNA clone CSAD-01-D02 (AT007557) 92% (225) 524
OvAE1588 77 17 kDa myoglobin, Clonorchis sinensis (AAM18464) 81% (149) 244 C. sinensis cDNA clone CSAD-29-A12 (AT009373) 77% (188) 344
OvAE1585 77 hypothetical protein, C. sinensis (AAM55183) 84% (90) 156 C. sinensis cDNA clone CS30 (AT006763) 84% (100) 199
OvAE1593 41 egg protein, C. sinensis (AAN64160) 89% (253) 389 C. sinensis cDNA clone CSAD-20-B05 (AT008604) 82% (237) 477
OvAE1584 37 hypothetical protein, Macaca fascicularis (BAE73006) 67% (59) 82 SJA_AAF_D11.T3 SJA S. japonicum (CX857852) 85% (94) 183
OvAE1602 21 histone H1, Schistosoma japonicum (AAP06509) 74% (70) 112 C.sinensis cDNA clone CSAD-25-H03 (AT009091) 85% (177) 302
OvAE1607 17 egg protein, C. sinensis (AAN64160) 59% (252) 288 C. sinensis cDNA clone CSAD-01-B01 (AT007532) 82% (252) 493
OvAE1595 16 retrotransposon gag region, Monascus pilosus (ABC24965) 31% (57)b 33 NA NA NA
OvAE1608 15 translationally controlled tumor protein, C. sinensis (AAX84199) 98% (169) 306 C. sinensis cDNA clone CSAD-24-E07(AT008979) 92% (122) 228
OvAE1601 11 glutathione-S-transferase, O. viverrini (AAL23713) 98%(213) 429 C. sinensis cDNA clone CSAD-32-E05 (AT009695) 86% (232) 484
  1. aNon-ribosomal sequences only were used in this analysis.
  2. bSequence identity was low but diagnostic motifs of gag were detected over 57 amino acids.