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Table 2 510 uniquely mapped BAC clones compared to LG chromosome assignment in four zebrafish genome databases

From: Definition of the zebrafish genome using flow cytometry and cytogenetic mapping

 

No. of clones*

Percent of clones

UCSC genome browser

  

   Not in database

74

14.5

   Present in database

436

85.5

Agree

331

75.9

Disagree

78

17.9

Mapped to "U" †

27

6.2

Ensembl (Zv6-Release 40) ‡

  

   Not in database

262

51.4

   Present in database

248

48.6

Agree

215

86.7

Disagree

29

11.7

Mapped to "U"

4

1.6

Sanger WebFPC (August 2006)

  

   Not in database

123

24.1

   Present in database

387

75.9

Agree

358

92.5

Disagree

29

7.5

Mapped to "U"

0

0.0

Vega (version 20)

  

   Not in database

211

41.4

   Present in database

299

58.6

Agree

255

85.3

Disagree

26

8.7

Mapped to "U"

18

6.0

  1. *Total number of clones based upon the 510 BAC clones assigned to a unique LG chromosome by FISH mapping
  2. †Mapped unambiguously to an unknown chromosome (chromosome U)
  3. ‡Zv6 (version 6-Release 40) of Ensembl does not contain 233 Danio Key (zK) BAC clones which were uniquely assigned to a specific LG chromosome in this study
  4. Data obtained as of August 2006