Protein classb | Log-Oddsc Mean (SD) | Log-Odds Minimum | Log-Odds Maximum | Hitsd |
|---|
Non-Transcription | 6.87 (2.24) | 1.49 | 24.43 | 48716 |
Fox | 14.34 (5.65) | 5.97 | 29.23 | 54 |
Para-Hox | 11.61 (4.83) | 3.64 | 23.45 | 155 |
Other Transcription | 7.72 (2.67) | 3.48 | 17.42 | 318 |
All Transcription | 9.07 (4.28) | 3.48 | 29.23 | 647 |
- a SWISS protein database integrated in the Meta-MEME software package (version 3.2).
- b Protein classes were defined by the presence of a conserved DNA-binding domain for transcriptional proteins, or by the absence of a DNA-binding domain for non-transcriptional proteins. Non-Transcription, proteins that are not members of defined families of transcriptional proteins; Fox, Fox family proteins; Para-Hox, para-Hox class of homeodomain proteins; Other Transcription, transcriptional proteins excluding Fox and para-Hox proteins; All Transcription, all transcriptional proteins.
- c Log-odds score is the ratio of a sequence score with respect to the foreground model versus the sequence score with respect to the background model. The log-odds score is the logarithm of an odds score in base 2. SD, standard deviation.
- d Hits are positions in the background sequence that align with a motif model.
