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Table 3 Distribution of strain Lai CDSs and CGH analysis identified absent CDSs in tested strains by functional classes

From: Genetic diversity among major endemic strains of Leptospira interrogans in China

Category* No. of CDSs in strain Lai No. of CDSs absence# % of absent CDSs
Translation 177 5 2.82
Transcription 154 10 6.49
Replication, recombination and repair 250 15 6.00
Cell cycle control, mitosis and meiosis 63 8 12.70
Defense mechanisms 51 6 11.76
Signal transduction mechanisms 254 8 3.15
Cell wall/membrane biogenesis 236 39 16.53
Cell motility 120 6 5.00
Intracellular trafficking and secretion 73 5 6.85
Posttranslational modification, protein turnover, chaperones 121 4 3.31
Energy production and conversion 153 2 1.31
Carbohydrate transport and metabolism 144 19 13.19
Amino acid transport and metabolism 218 7 3.21
Nucleotide transport and metabolism 62 2 3.23
Coenzyme transport and metabolism 116 3 2.59
Lipid transport and metabolism 114 2 1.75
Inorganic ion transport and metabolism 145 2 1.38
Secondary metabolites biosynthesis, transport and catabolism 62 9 14.52
General function prediction only 504 49 9.72
Function unknown 228 15 6.58
  1. * Functional categories of strain Lai CDSs were based on information from the GenBank database [67].
  2. # Some of the CDSs were not include in any of the categories, while some other CDSs may belong to more than one category. Therefore, the sum of the absent genes for individual category does not equal to the total number of the absent CDSs