Table 3 Distribution of strain Lai CDSs and CGH analysis identified absent CDSs in tested strains by functional classes
From: Genetic diversity among major endemic strains of Leptospira interrogans in China
Category* | No. of CDSs in strain Lai | No. of CDSs absence# | % of absent CDSs |
|---|---|---|---|
Translation | 177 | 5 | 2.82 |
Transcription | 154 | 10 | 6.49 |
Replication, recombination and repair | 250 | 15 | 6.00 |
Cell cycle control, mitosis and meiosis | 63 | 8 | 12.70 |
Defense mechanisms | 51 | 6 | 11.76 |
Signal transduction mechanisms | 254 | 8 | 3.15 |
Cell wall/membrane biogenesis | 236 | 39 | 16.53 |
Cell motility | 120 | 6 | 5.00 |
Intracellular trafficking and secretion | 73 | 5 | 6.85 |
Posttranslational modification, protein turnover, chaperones | 121 | 4 | 3.31 |
Energy production and conversion | 153 | 2 | 1.31 |
Carbohydrate transport and metabolism | 144 | 19 | 13.19 |
Amino acid transport and metabolism | 218 | 7 | 3.21 |
Nucleotide transport and metabolism | 62 | 2 | 3.23 |
Coenzyme transport and metabolism | 116 | 3 | 2.59 |
Lipid transport and metabolism | 114 | 2 | 1.75 |
Inorganic ion transport and metabolism | 145 | 2 | 1.38 |
Secondary metabolites biosynthesis, transport and catabolism | 62 | 9 | 14.52 |
General function prediction only | 504 | 49 | 9.72 |
Function unknown | 228 | 15 | 6.58 |