Table 2 Top table of 85 microarray probes identified as differentially expressed (q < 0.015) in all three contrasts between White Leghorn and red junglefowl (male vs. male, female vs. female and all WL vs. all RJ)
GenBank ID | Ensembl gene ID | Position | Annotation 1 | M 2 | q-value 3 |
|---|---|---|---|---|---|
[GenBank:CN217913] | ENSGALG00000018770 | Un: 28.3 Mb | NA | -0.40 | 3.2E-12 |
[GenBank:CN229911] | ENSGALG00000013482 | Un: 21.4 Mb | NA | -0.38 | 9.8E-11 |
[GenBank:CN228750] | ENSGALG00000016807 | 1: 140.6 Mb | Lim and senescent cell-antigen like domains 1 (LIMS1) | -0.86 | 9.8E-11 |
[GenBank:CN225543] | ENSGALG00000012809 | 2: 67.1 Mb | Peroxisomal D3,D2-enoyl-CoA isomerase (PECI) | -0.43 | 2.7 E-09 |
[GenBank:CN223571] | ENSGALG00000014429 | Un: 60.2 Mb | similar to trans-golgi network protein 2 (TGOLN2) | -0.56 | 5.0 E-09 |
[GenBank:CN219393] | ENSGALG00000008774 | 3: 104.9 Mb | Paralogue to PBX/knotted 1 homeobox 1 (PKNOX1) | -0.35 | 5.5 E-09 |
[GenBank:BU410845] | ENSGALG00000005079 | 6: 16.5 Mb | Vinculin (VCL) | -0.46 | 8.9 E-09 |
[GenBank:CN232734] | ENSGALG00000016171 | 2: 151.3 Mb | protein-tyrosine kinase 2 (PTK2) | -0.34 | 1.7 E-08 |
[GenBank:CN218021] | ENSGALG00000018770 | Un: 28.3 Mb | NA | -0.41 | 2.1 E-08 |
[GenBank:CN225644] | ENSGALG00000002659 | 17: 7.9 Mb | WD repeat domain 5 protein (WDR5) | -0.45 | 1.4 E-07 |
[GenBank:CN238026] | ENSGALG00000000978 | 21: 889 kb | Similar to KIAA0562 | 0.44 | 2.2 E-07 |
[GenBank:CN234176] | ENSGALG00000016171 | 2: 151.4 Mb | protein-tyrosine kinase 2 (PTK2) | -0.39 | 2.4 E-07 |
[GenBank:CN236144] | ENSGALG00000003797 | 7: 4.5 Mb | NA | 0.70 | 2.6 E-07 |
[GenBank:CN236164] | ENSGALG00000015289 | 3: 69.8 Mb | Armadillo repeat domain containing 2 (ARMC2) | 0.56 | 2.6 E-07 |
[GenBank:CN229608] | ENSGALG00000007968 | 1: 641 kb | Putative orthologue to FAM40B | -0.25 | 2.6 E-07 |
[GenBank:CN236322] | ENSGALG00000003078 | 18: 6.0 Mb | similar to monocyte to macrophage differentiation-associated (MMD) | -0.51 | 2.6 E-07 |
[GenBank:CN225020] | ENSGALG00000020260 | 4: 16.7 Mb | progesterone receptor membrane component 1 (PGRMC1) | -0.44 | 2.7 E-07 |
[GenBank:CN235998] | ENSGALG00000006921 | 15: 9.3 Mb | developmentally regulated GTP binding protein 1 (DRG1) | 0.32 | 3.8 E-07 |
[GenBank:CN224535] | ENSGALG00000016323 | 1: 121.5 Mb | Putative orthologue to Pyruvate dehydrogenase kinase isozyme 3 (PDK3) | 0.26 | 6.1 E-07 |
[GenBank:CN233472] | ENSGALG00000005079 | 6: 16.5 Mb | Vinculin (VCL) | -0.34 | 6.1 E-07 |
[GenBank:CN222595] | ENSGALG00000004818 | 15: 6.5 Mb | 60S ribosomal protein L6 (RPL6) | -0.45 | 6.1 E-07 |
[GenBank:CN238036] | ENSGALG00000000978 | 21: 889 kb | Similar to KIAA0562 | 0.40 | 7.9 E-07 |
[GenBank:CN226213] | Â | 1: 130.1 Mb | NA | -0.40 | 2.9 E-06 |
[GenBank:CN229954] | ENSGALG00000007941 | 5: 21.2 Mb | Similar to human C11orf74 protein | 0.17 | 3.4 E-06 |
[GenBank:CN217480] | ENSGALG00000003107 | 11: 2.1 Mb | Autocrine motility factor receptor, isoform 2 (AMFR) | -0.15 | 3.4 E-06 |
[GenBank:CN221901] | Â | NA | NA | -0.63 | 4.0 E-06 |
[GenBank:CN225340] | ENSGALG00000022549 | Un: 49.4 Mb | Putative orthologue to V-set and transmembrane domain containing (VSTM1) | -0.67 | 4.3 E-06 |
[GenBank:CN227456] | Â | 2: 3.8 Mb | NA | -0.59 | 4.3 E-06 |
[GenBank:CN218246] | ENSGALG00000024009 | 5: 680 kb | NA | 0.24 | 5.5 E-06 |
[GenBank:CN232981] | ENSGALG00000000212 | Z: 43.0 Mb | Growth arrest and DNA-damage-inducible protein GADD45 beta (GADD45B) | -0.28 | 5.5 E-06 |
[GenBank:CN237898] | Â | 26: 4.8 Mb | NA | -0.25 | 5.5 E-06 |
[GenBank:CN230682] | Â | Un: 33.1 Mb | NA | 0.37 | 6.0 E-06 |
[GenBank:CN230471] | ENSGALG00000015972 | 1: 108.8 Mb | interferon gamma receptor 2 (IFNGR2) | -0.36 | 6.0 E-06 |
[GenBank:CN223293] | Â | NA | NA | 0.34 | 6.2 E-06 |
[GenBank:BU303036] | ENSGALG00000013094 | 2: 83.0 Mb | Dopa decarboxylase (DDC) | -0.34 | 1.3 E-05 |
[GenBank:CN218709] | ENSGALG00000001564 | 19: 3.3 Mb | Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 (SERCA3) | -0.33 | 1.3 E-05 |
[GenBank:CN226292] | Â | 4: 51.2 Mb | NA | -0.46 | 1.6 E-05 |
[GenBank:CN226240] | ENSGALG00000022145 | Un: 45.0 Mb | Cell division cycle associated 8 (CDCA8) | -0.67 | 1.6 E-05 |
[GenBank:CN237835] | ENSGALG00000001573 | 19: 3.3 Mb | Putative orthologue to purinergic receptor P2X ligand-gated ion channel 1 (P2RX1) | -0.30 | 2.0 E-05 |
[GenBank:CN218191] | ENSGALG00000015960 | 4: 89.4 Mb | Putative orthologue to Ribose-5-phosphate isomerase (RPIA) | -0.22 | 2.5 E-05 |
[GenBank:CN218073] | ENSGALG00000008285 | 1: 13.9 Mb | NA | -0.33 | 2.5 E-05 |
[GenBank:CN225607] | Â | 3: 134.8 Mb | NA | 0.29 | 2.7 E-05 |
[GenBank:CN224144] | ENSGALG00000001024 | 21: 960 kb | Putative orthologue to Protein FAM79A | 0.22 | 3.1 E-05 |
[GenBank:CN234653] | ENSGALG00000004414 | 5: 1.15 Mb | Putative orthologue to leucine zipper protein 2 (LUZP2) | -0.79 | 3.1 E-05 |
[GenBank:CN232675] | ENSGALG00000002384 | 7: 289 kb | NA | 0.19 | 3.6 E-05 |
[GenBank:CN229033] | Â | 1: 6.3 Mb | NA | -0.35 | 3.6 E-05 |
[GenBank:CN220674] | ENSGALG00000015842 | 1: 107.9 Mb | Putative orthologue to T-cell lymphoma invasion and metastasis 1 (TIAM1) | -0.22 | 3.6 E-05 |
[GenBank:CN225767] | ENSGALG00000008686 | 2: 19.8 Mb | Putative orthologue to tRNA (cytosine-5-)-methyltransferase (TRDMT1) | 0.26 | 3.8 E-05 |
[GenBank:CN228075] | ENSGALG00000014880 | Z: 14.2 Mb | Putative orthologue to Poly ADP-ribose polymerase 8 (PARP8) | -0.40 | 3.9 E-05 |
[GenBank:CN236904] | ENSGALG00000004823 | 8: 8.4 Mb | Ring finger protein 2 (RNF2) | 0.19 | 4.4 E-05 |
[GenBank:CN227721] | ENSGALG00000024253 | Un: 21.8 Mb | NA | 0.29 | 4.6 E-05 |
[GenBank:CN219383] | Â | Un: 57.4 Mb | NA | -0.21 | 4.8 E-05 |
[GenBank:CN218286] | Â | 1: 16.9 Mb | NA | 0.35 | 5.9 E-05 |
[GenBank:BU383276] | Â | 7: 5.02 Mb | NA | -0.45 | 6.2 E-05 |
[GenBank:CN228342] | ENSGALG00000004981 | 12: 5.12 Mb | tRNA-splicing endonuclease subunit Sen2 (TSEN2) | -0.20 | 6.5 E-05 |
[GenBank:CN219649] | Â | 18: 9.2 Mb | NA | -0.39 | 6.5 E-05 |
[GenBank:CN235129] | ENSGALG00000015976 | 1: 108.8 Mb | Putative orthologue to Transmembrane protein 50B (TMEM50B) | -0.36 | 6.9 E-05 |
[GenBank:CN222892] | ENSGALG00000011834 | 4: 55.1 Mb | Nucleoside diphosphate-linked moiety X motif 6 (NUDT6) | 0.27 | 6.9 E-05 |
[GenBank:CN227190] | ENSGALG00000015637 | 2: 122.5 Mb | Putative orthologue to 60S ribosomal protein L7 (RPL7) | -0.43 | 8.8 E-05 |
[GenBank:CN235632] | ENSGALG00000014011 | 1: 69.3 Mb | Putative orthologue to lymphoid-restricted membrane protein (LRMP) | -0.35 | 9.3 E-05 |
[GenBank:CN232385] | ENSGALG00000009822 | 3: 23.0 Mb | NA | 0.18 | 9.9 E-05 |
[GenBank:CN217382] | ENSGALG00000005587 | 5: 9.7 Mb | Eukaryotic translation initiation factor 4 gamma 2 (EIF4G2) | -0.29 | 1.2 E-04 |
[GenBank:CN222062] | Â | 11: 8.3 Mb | NA | 0.26 | 1.4 E-04 |
[GenBank:CN218760] | ENSGALG00000011031 | 8: 29.0 Mb | Janus kinase 1 (JAK1) | -0.32 | 1.8 E-04 |
[GenBank:CN230192] |  | * | gi| 212798| ± | 0.97 | 2.1 E-04 |
[GenBank:CN227388] |  | * | gi| 28971912| ± | 1.24 | 2.5 E-04 |
[GenBank:CN234584] |  | * | gi| 118084693| ± | 1.22 | 2.5 E-04 |
[GenBank:CN222174] | ENSGALG00000007378 | 1: 79.9 Mb | NA | 0.20 | 2.9 E-04 |
[GenBank:CN219692] | Â | 23: 1.4 Mb | NA | 0.24 | 3.0 E-04 |
[GenBank:CN217559] | ENSGALG00000009621 | Un: 20.4 Mb | Putative orthologue to gamma actin (ACTG) | -0.53 | 3.5 E-04 |
[GenBank:CN222240] | ENSGALG00000014494 | Un: 42.5 Mb | Putative orthologue to vacuolar protein sorting 16 (VPS16) | 0.17 | 3.8 E-04 |
[GenBank:CN235771] | ENSGALG00000008285 | 1: 13.9 Mb | Putative orthologue to N-acyl-phosphatidylethanolamine-hydrolyzingphospholipase D (NP_945341.2) | -0.28 | 3.8 E-04 |
[GenBank:CN227888] | ENSGALG00000006545 | Un: 33.2 Mb | Ran-binding protein 2 (RanBP2) | -0.42 | 3.8 E-04 |
[GenBank:DQ211077] | ENSGALG00000024372 * | 16: 40 kb * | MHC class I antigen (Fragment) | -0.70 | 4.4 E-04 |
[GenBank:CN228106] | ENSGALG00000022764 | Â | NA | 0.13 | 4.6 E-04 |
[GenBank:CN217063] | ENSGALG00000009201 | 14: 15.0 Mb | Putative orthologue to Cyclin F (CCNF) | -0.29 | 5.7 E-04 |
[GenBank:CN234096] | ENSGALG00000014339 | Un: 11.3 Mb | Putative orthologue to Biogenesis of lysosome-related organelles complex-1 subunit 3 (BLOC1S3) | -0.42 | 6.0 E-04 |
[GenBank:CN220094] | ENSGALG00000016241 | 1: 115.9 Mb | Putative orthologue to ATPase, H+ transporting, lysosomal, accessory protein 2 (ATP6AP2) | 0.37 | 9.4 E-04 |
[GenBank:CN219753] | Â | 20: 5.5 Mb | NA | 0.25 | 9.9 E-04 |
[GenBank:CN231414] | ENSGALG00000016813 | 1: 141.1 Mb | NA | 0.51 | 0.0011 |
[GenBank:CN233509] | Â | 1: 172.6 Mb | NA | -0.22 | 0.0019 |
[GenBank:CN218972] | ENSGALG00000007178 | 5: 18.0 Mb | Putative orthologue of fatty acid desaturase 2 (FADS2) | -0.32 | 0.0034 |
[GenBank:CN231098] | ENSGALG00000015122 | 2: 107.4 Mb | Putative orthologue of TAF4b RNA polymerase II, TATAbox binding protein (TBP)-associated factor, 105 kDa (TAF4B) | 0.56 | 0.0046 |
[GenBank:CN222925] | ENSGALG00000011164 | 2: 33.7 Mb | NA | -0.46 | 0.012 |
[GenBank:CN218459] | ENSGALG00000016340 | 1: 121.7 Mb | Putative orthologue of Eukaryotic translation initiationfactor 2 subunit 3 (EIF2S3) | -0.20 | 0.014 |