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Table 2 Access to the Salmon Genome Project web resources.

From: Annotated Expressed Sequence Tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource

Salmon Genome Project (SGP) data resource
Option name and description Access from menu on the main page
SGP data and results statistics Data and results > Results > General statistics; Sequence length statistics
Data and results > cDNA libraries > SGP libraries list short; SGP libraries list full
Database search
SGP database text queries on sequence descriptions and annotations best hits, or searches of the SGP and NCBI sequence databases (Sequence search)
Database search > Simple search; Advanced search; Sequence search
ESTs submitted to GenBank Data and results > Results > EST sequences in GenBank; Sequences in UniGene
cDNA libraries
Description and number of ESTs in SGP libraries, pre-processed sequences, clustered and singlet sequences, sequences submitted to GenBank
Data and results > cDNA libraries > SGP libraries list short; SGP libraries list full > select library
Data and results > cDNA libraries > SGP libraries > select library
Clustered data datasets
Description and access to database snapshots of clustering and automatic annotation results for specific sets of data
Data and results > Clustered data datasets
Clustered data summary
Clustering data and annotation best hits results for datasets Contigs and singlets annotation Contigs length and number of reads
Data and results > Clustered data summary > SGP >
> Contigs and best annotation hits; Singlets and best annotation hits
> Contigs length and number of reads; Distribution of average length and number of reads in contigs
Contig and singlet sequences
Singlets and contig consensus sequences resulting from contig assembly of data from SGP cDNA libraries
Data and results > Clustered data datasets > Contigs; Singlets
Data and results > cDNA libraries > SGP libraries (or select library) > Clustered and singlets sequences
SGP Database > Search SGP database > Advanced search
Annotations
Detailed BLAST-GO automatic annotation results and annotation statistics for datasets
Data and results > Annotations
Database search > Simple search; Advanced search
preAssemble
Pre-assembly automatic sequencer data processing pipeline available as a web-based tool and for downloading
SGP workbench > preAssemble
Supplemental > Download preAssemble
SGP local BLAST server
BLAST queries against the SGP local database, Salmonidae-specific and other NCBI datasets
SGP workbench > Blast search