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Table 2 SNPs and SSRs detection in the candidate genes using in silico detection (a) and re-sequencing (b).

From: Mapping a candidate gene (MdMYB10) for red flesh and foliage colour in apple

a)         
  Number of cDNA clones in the contig alignment (number of cultivars) Contig size (bp) Number of SNPs      
MdBHLH3 8 (3) 2,717 19      
MdTTG1 10 (5) 1,575 2      
MdBAN 51 (12) 1,468 21      
MdCHS 87 (9) 1,548 29      
MdDFR 21 (7) 1,542 6      
MdF3H 30 (6) 1,388 3      
MdANS 19 (5) 1,468 23      
Total - 11,706 103      
b)         
    Intron Exon   
Gene ID Number of cDNA clones in the contig alignment (number of cultivars) Size of the PCR fragment sequenced (bp) Size (bp) Number of SNPs Size (bp) Number of SNPs Total number of SNPs SSR
MdMYB10 na 1,945 1,331 9 614 2 11 -
MdMYB9 2 (2) 606 203 0 403 1 1 CT15
MdMYB17 3 (2) 1,392 1,010 0 382 0 0 T14 -- AT10
MdBHLH33 4 (3) 1,168 593 6 575 4 10 -
MdANL2 4 (3) 635 137 0 498 0 0 -
MdMYB12 5 (2) 730 223 4 507 4 8 TGTA14
MdBHLH3 8 (3) 522 99 0 423 0 0 CT15
Total - 6,998 3,596 19 3,402 11 30 4