Table 3 List of candidate genes studied and marker information
From: Mapping a candidate gene (MdMYB10) for red flesh and foliage colour in apple
Gene type | Gene ID | Marker type | Forward primer | Reverse primer | PCR product (bp) | LG |
|---|---|---|---|---|---|---|
MdMYB10 | Indel | CGAGTGCTAATAGCAACC | CCTCTGTTGGCCGAATACAC | 786 | 9 | |
AATGGCCTACCACATCATTG | 1,182 | |||||
MdMYB9 | SSR | TCCATAACCTTCTTGGTAACAG | AAGGAGAATCGGCTTTCGAT | 329 | NP | |
MdMYB17 | SSR | TGCTCCTCTCTAGCTATTGCATAAT | AAGACTCACAAACTAGCTGTCAAAT | 205 | 14 | |
Transcription factors | MdBHLH33 | SNP | TGGCATTCAGCTAAAACCT AAT | TCTCTGGCACCCTCTCTTGG | 145 | NP |
MdANL2 | - | - | - | - | - | |
MdBHLH3 | SSR | CAACTCCCCTTATTCTTCTTCTCTC | CACCTGACCTTCTCTCTACCTCTAC | 170 | 11 | |
MdMYB12 | SSR | CTCGGCAATCGGTAAAGCTA | TATGAACAGTGAAACCCTAACCCTA | 152 | 3 | |
MdTTG1 | SNP | CACCCGAACCCCAACGG CCA | CTCTCCAGCTCCGCCACTG | 527 | 15 | |
MdBAN | SNP | GTTGGGTGAGCTAGAGATATTC | GATACTGCTGGGAACGTCA GGA | 472 | 10 | |
MdCHS | SNP | GAGGAAGTTCGCAAGGCTCA | CCCCATTCCTTG ATGGCT A TGA | 343 | NP | |
Flavonoid pathway | MdDFR | SNP | CTGTGAATGTGGAGGAG GAC | TCAGTTTTCTCTGCCGGAAT | 616 | UL |
MdF3H | SNP | GGCGTGAAATTGTGACCTACTA TTT | TGACCACAAAAGCTCCTTCC | 392 | NP | |
MdANS | SNP | TCAGACCTAAAGATGAC CTT | TCCTGACCTTGTCCATGAGC | 1,449 | NP |