Array | All SNPs | MAF > .05 |
---|
 | Worst | Best | Average | Worst | Best | Average |
---|
NspI (250 k) | 0.952 (0.069) | 0.969 (0.056) | 0.957 (0.063) | 0.934 (0.072) | 0.963 (0.058) | 0.947 (0.065) |
StyI (250 k) | 0.944 (0.075) | 0.968 (0.067) | 0.955 (0.070) | 0.944 (0.079) | 0.964 (0.070) | 0.949 (0.073) |
Both (500 K) | 0.949 (0.071) | 0.962 (0.062) | 0.956 (0.066) | 0.94 (0.075) | 0.956 (0.065) | 0.948 (0.069) |
- Values are mean Pearson correlation coefficients (r) between the 5 DNA pools using the average of all quartet estimates (RASav-all). 'Worst' and 'Best' refer to the 10 bivariate comparisons between the 5 DNA pools and 'Average' is the average of these 10 correlations. Values in parentheses are mean absolute differences between DNA pools. 'All SNPs' includes all SNPs on the array (including rare and non-polymorphic SNPs) for which 70% of quartet measurements were available (N = 457,607 – 487,666 across both microarrays). 'MAF > .05' only includes SNPs with minor allele frequency greater than .05 (N = 428,179 – 456,241 across both microarrays).