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Table 3 Number of copies classified by truncation level (after filter)

From: LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

Family name

Genomic copies

Genomic copies with insertion date

 

2 LTRs

LTR-IR

IR

LTR

Total Frag.

Total

LTR/Frag.

2 LTRs/Total

2 LTRs

LTR-IR

IR

LTR

Total Frag.

Total

Osr12

5

1

0

0

1

6

0%

83%

5

1

0

0

1

6

Osr2

3

2

0

0

2

5

0%

60%

1

0

0

0

0

1

Houba/Tos5/Osr13

206

105

14

113

232

438

49%

47%

199

20

0

15

35

234

Osr17

50

37

20

5

62

112

8%

45%

49

5

1

2

8

57

Hopi/Osr27

357

215

177

143

535

892

27%

40%

338

45

49

39

133

471

Osr15

28

40

4

0

44

72

0%

39%

27

6

0

0

6

33

Osr7

9

10

2

8

20

29

40%

31%

9

2

0

0

2

11

Osr36

4

1

8

0

9

13

0%

31%

4

1

0

0

1

5

Osr29

85

143

49

82

274

359

30%

24%

79

9

6

15

30

109

Osr6

4

3

12

2

17

21

12%

19%

3

0

0

0

0

3

Osr8

122

179

41

310

530

652

58%

19%

104

2

0

8

10

114

Osr35

1

2

3

0

5

6

0%

17%

1

0

0

0

0

1

Dagul

91

141

52

333

526

617

63%

15%

87

7

0

25

32

119

Osr30

143

261

93

497

851

994

58%

14%

127

11

5

32

48

175

Osr42

1

1

5

0

6

7

0%

14%

1

0

0

0

0

1

Osr3

5

15

16

0

31

36

0%

14%

5

1

0

0

1

6

Osr28

4

3

3

23

29

33

79%

12%

3

1

0

0

1

4

Osr38

0

2

4

0

6

6

0%

0%

0

0

0

0

0

0

  1. Frag.: fragment; LTR: Long Terminal Repeat; IR: Internal Region.