Table 4 Transcription inference of Msn2 and Msn4 based on ChIP-chip binding data from different conditions. Positive and negative effect is shown in normal and italic font, respectively. The "num" column indicates the number of target genes of a transcription factor under a specific condition at the 0.01 significance level according to the ChIP-chip data.
From: Inference of transcription modification in long-live yeast strains from their expression profiles
Transcription Factor | Condition | Num | sch9Δ/wt | ras2Δ/wt | tor1Δ/wt |
|---|---|---|---|---|---|
MSN2 | YPD | 43 | 0.33 | 0.04 | 0.43 |
| Â | Acid | 145 | 9.1E-04 | 1.2E-05 | 6.8E-07 |
| Â | RAPA | 101 | 0.14 | 0.033 | 0.24 |
| Â | H2O2Hi | 114 | 0.014 | 0.0031 | 0.016 |
| Â | H2O2Lo | 140 | 0.18 | 0.004 | 0.019 |
| Â | HEAT | 24 | 0.01 | 0.14 | 0.37 |
MSN4 | YPD | 145 | 8.5E-04 | 0.21 | 7.9E-06 |
| Â | Acid | 37 | 0.13 | 0.018 | 0.067 |
| Â | RAPA | 131 | 0.19 | 0.14 | 0.31 |
| Â | H2O2Hi | 169 | 0.084 | 6.7E-04 | 0.033 |
| Â | H2O2Lo | 67 | 0.19 | 0.0036 | 0.048 |