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Table 2 Defense-related genes induced after P. rapae feeding in cultivars Rivera and Christmas Drumhead.

From: Genotypic variation in genome-wide transcription profiles induced by insect feeding: Brassica oleraceaPieris rapae interactions

   Rivera Christmas Drumhead
Probe Identification and Putative Function AGI Code 24 h 48 h 72 h 24 h 48 h 72 h
Genes only induced in Rivera        
Basic endochitinase At3g12500 1.12 2.54* 2.62 1.06 1.37 1.94
Cup-shaped cotyledon1 protein (CUC1) At3g15170 1.07 1.63 2.21* 1.11 1.26 1.92
DNA-binding protein At1g49950 1.35 0.34 2.25* 1.66 1.81 1.50
Glutathione S-transferase At1g27130 1.02 2.64* 2.01* 1.17 1.21 1.98
Glycosyl hydrolase 1 (BG1) At1g52400 1.14 2.79 11.00* 2.71 -1 6.45
Lectin At5g35950 0.89 2.51* 1.32 1.02 1.28 1.79
MYB transcription factor At1g71030 1.16 2.07* 1.60 1.26 1.06 1.79
Telomere repeat-binding protein At3g46590 0.95 2.48* 1.41 1.24 0.87 1.51
Terpene synthase At4g16730 1.13 4.15* 2.82* 1.16 1.26 1.97
Trypsin inhibitor At2g43520 1.19 1.74 3.70* 1.51 -1 2.44
Genes only induced in Christmas Drumhead        
Cytochrome P450 71B15 (CYP71B15) At3g26830 1.01 1.90 -1 1.32 1.33 3.51*
ERF domain protein 9 (ERF9) At5g44210 1.08 1.47 -1 1.19 1.23 2.01*
Glutathione S-transferase (ERD9) At1g10370 1.04 1.55 1.33 1.54 1.77 2.10*
IAA-amino acid hydrolase 3 (IAR3) At1g51760 1.13 1.76 1.42 1.05 1.23 2.01*
Lectin At3g16400 1.13 1.86 1.51 1.58 2.03* 1.78
Legume lectin At1g53070 0.98 1.73 2.03 1.31 1.67 4.21*
MADS-box protein (AGL74) At1g48150 1.42 0.44 1.40 1.87 2.79* 1.54
Terpene synthase At5g23960 -1 -1 -1 1.27 1.15 4.29*
Tryptophan synthase β subunit 2 (TSB2) At4g27070 1.03 1.50 1.19 1.30 2.00 2.94*
Vegetative storage protein 2 (VSP2) At5g24770 -1 1.10 6.96 2.68 3.49 16.20*
Genes induced in both cultivars        
Allene oxide synthase (AOS) At5g42650 1.71 3.27* 2.46* 1.72 2.08* 3.50*
Coronatine-responsive tyrosine aminotransferase At4g23600 2.28 28.34* 10.11* 7.70* 7.89* 14.70*
Cysteine proteinase (RD21A) At1g47128 1.02 2.06* 2.83* 1.83 2.66* 3.96*
Cytochrome b5 At2g46650 1.07 3.02* 1.71 1.18 3.13* 3.68
Cytochrome P450 79B2 (CYP79B2) At4g39950 1.47 3.23* 4.45* 1.37 1.74 7.18*
Cytochrome P450 83B1 (CYP83B1) At4g31500 1.59 19.92* 9.38* 3.23* 10.40* 10.99*
Ethylene-responsive element-binding protein At5g07580 1.99 6.88* 1.89 3.17* 5.73* 7.37*
Glutathione S-transferase 6 (GST6) At2g47730 1.06 2.03* 1.50 1.44 2.82* 2.40*
Hydroperoxide lyase (HPL1) At4g15440 1.26 2.88* 2.05* 1.51 2.86* 3.75*
Lectin At3g16470 1.71 3.67 15.33* 3.36 5.93* 7.21*
Lectin kinase At3g45410 2.57 14.61* 4.53* 8.38* 3.88* 7.04*
Lipoxygenase (LOX2) At3g45140 4.74 29.91* 29.27* 11.65* 11.89* 14.53*
MYB transcription factor (MYB49) At5g54230 1.17 4.36* 1.96 1.13 1.63 6.29*
Myrosinase-associated protein At1g54020 1.46 4.28* 5.01* 3.06* 2.22* 6.54*
Plant defensin-fusion protein (PDF2.3) At2g02130 1.11 1.34 2.16* 1.76 2.92* 2.19*
Polygalacturonase inhibiting protein 2 (PGIP2) At5g06870 1.09 3.37* 5.99* 3.04 5.31* 20.16*
Terpene synthase At1g61120 1.69 3.48* 5.32* 3.37* 2.44* 3.04*
Trypsin inhibitor At2g43530 1.59 2.66* 4.34* 3.25 2.11* 4.62*
Trypsin/protease inhibitor At1g72290 3.03 38.70* 23.75* 13.18* 24.37* 34.11*
Tryptophan synthase α subunit (TSA1) At3g54640 1.19 15.18* 6.72* 2.73 17.34* 12.69*
Tryprophan synthase β subunit 1 (TSB1) At5g54810 0.94 5.48* 3.43* 1.34 3.91* 4.47
  1. Relative changes in gene expression after challenge with P. rapae larvae were measured in Rivera and Christmas Drumhead plants. Mean expression ratios are calculated from three biologically independent replicates. Only genes known to be involved in defense in A. thaliana are shown. *Fold change ≥ 2 with a P-value < 0.05. 170-mer oligonucleotide did not hybridize in any of the three replicates. AGI, Arabidopsis Genome Initiative.