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Table 1 Classification of single nucleotide polymorphisms (SNPs) derived from the comparison of four mouse inbred strains.

From: Mouse SNP Miner: an annotated database of mouse functional single nucleotide polymorphisms

Strains SNP Consequence Total SNPs (%) Genes Effected(%)
C57BL/6J vs. DBA/2J non-synonymous 9,079 (96.6%) 2,956 (90.3%)
  stop-gained 153 (1.7%) 153 (4.7%)
  stop-lost 26 (0.3%) 26 (0.8%)
  splice-site 129 (1.4%) 129 (4%)
  frameshift 13 (0.2%) 13 (0.4%)
  Total 9,400 3,277
C57BL/6J vs. 129S1/SvImJ non-synonymous 4,084 (96.5%) 1,597(92.1%)
  stop-gained 73 (1.8%) 67 (3.9%)
  stop-lost 7 (0.2%) 7 (0.5%)
  splice-site 68 (1.7%) 63 (3.7%)
  frameshift 1 (0.1%) 1 (0.1%)
  Total 4233 1,735
C57BL/6J vs. A/J non-synonymous 12,435 (96.2%) 3,653 (90.7%)
  stop-gained 262 (2.1%) 191 (4.8%)
  stop-lost 22 (0.2%) 21 (0.6%)
  splice-site 182 (1.5%) 154 (3.9%)
  frameshift 27 (0.3%) 11 (0.3%)
  Total 12,928 4,030
  1. Total number and frequency of Ensembl predicted missense, stop-gained, stop-lost, frameshift, and splice site SNPs for C57BL/6J vs. DBA/2J, C57BL/6J vs. 129S1/SvImJ, and C57BL/6J vs. A/J.