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Table 1 List of 75 MADS-box genes identified in rice and their sequence characteristics (bp, base pair; aa, amino acids; D, Dalton).

From: MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress

S.No.

Name

Accession Number

ORF (bp)

Protein

Introns

Type

  

TIGR

KOME

 

Length (aa)

Mol. Wt (d)

PI

  

1

OsMADS1

LOC_Os03g11614

AK070981

AK069728

774

257

29.53

7.34

7

MIKCc

2

OsMADS2

LOC_Os01g66030

AK070894

630

209

24.16

7.7

6

MIKCc

3

*OsMADS3

LOC_Os01g10504

AK108568

864

287

32.12

9.33

8

MIKCc

4

OsMADS4

LOC_Os05g34940

AK100233

633

210

24.38

9.1

6

MIKCc

5

OsMADS5

LOC_Os06g06750

AK064184

678

225

25.99

7.46

7

MIKCc

6

OsMADS6

LOC_Os02g45770

AK069103

753

250

28.44

9.33

7

MIKCc

7

OsMADS7/45

LOC_Os08g41950

AK100263

933

310

36.12

10.12

9

MIKCc

8

OsMADS8/24

LOC_Os09g32948

AK072867

747

248

28.53

9.21

7

MIKCc

9

OsMADS13

LOC_Os12g10540

AK070425

813

270

30.27

9.51

7

MIKCc

10

OsMADS14

LOC_Os03g54160

AK121171

762

253

29.21

9.32

7

MIKCc

11

OsMADS15

LOC_Os07g01820

AK072683

804

267

30.39

9.49

7

MIKCc

12

OsMADS16

LOC_Os06g49840

AK069317

675

224

25.46

8.63

6

MIKCc

13

OsMADS17

LOC_Os04g49150

AK070540

765

254

28.80

8.97

7

MIKCc

14

OsMADS18/28

LOC_Os07g41370

AK064704

750

249

28.28

9.29

7

MIKCc

15

OsMADS20

LOC_Os12g31748

AY250075

522

233

20.44

6.95

5

MIKCc

16

OsMADS21

LOC_Os01g66290

AK070958

798

265

29.39

8.62

7

MIKCc

17

OsMADS22

LOC_Os02g52340

AK070121

687

228

25.59

5.41

7

MIKCc

18

OsMADS23

LOC_Os08g33488

NA

480

159

18.36

9.8

4

MIKCc

19

OsMADS25

LOC_Os04g23910

AK102927

684

227

26.14

8.95

7

MIKCc

20

OsMADS26

LOC_Os08g02070

AK069122

669

222

25.22

7.45

6

MIKCc

21

OsMADS27

LOC_Os02g36924

NA

723

240

27.42

9.48

7

MIKCc

22

OsMADS29

LOC_Os02g07430

AK109522

783

260

28.99

6.85

7

MIKCc

23

OsMADS30

LOC_Os06g45650

NA

666

221

25.78

7.51

7

MIKCc

24

OsMADS31

LOC_Os04g52410

NA

537

178

21.25

10.21

3

MIKCc

25

OsMADS32

LOC_Os01g52680

NA

591

196

22.53

8.2

6

MIKCc

26

OsMADS33

LOC_Os12g10520

NA

609

202

23.23

9.85

6

MIKCc

27

OsMADS34

LOC_Os03g54170

AK100227

720

239

26.88

7.55

7

MIKCc

28

OsMADS37

LOC_Os08g41960

NA

612

203

22.56

10.36

3

MIKC*

29

OsMADS47

LOC_Os03g08754

NA

753

250

27.91

6.57

7

MIKCc

30

OsMADS50

LOC_Os03g03100

AK104921

351

116

13.28

11.2

6

MIKCc

31

OsMADS55

LOC_Os06g11330

AK111859

672

223

24.84

4.74

7

MIKCc

32

OsMADS56

LOC_Os10g39130

AK070135

702

233

26.31

10.03

7

MIKCc

33

OsMADS57

LOC_Os02g49840

AK108784

726

241

27.24

9.16

7

MIKCc

34

OsMADS58

LOC_Os05g11414

AK111723

702

233

25.87

9.28

8

MIKCc

35

OsMADS59

LOC_Os06g23950

NA

234

77

85.96

10.29

1

MIKCc

36

OsMADS60

LOC_Os02g01360

AK121824

672

223

24.57

8.14

1

MIKCc

37

OsMADS61

LOC_Os04g38770

NA

300

99

11.30

10.04

2

MIKCc

38

OsMADS62

LOC_Os08g38590

NA

1014

337

36.19

4.44

8

MIKC*

39

OsMADS63

LOC_Os06g11970

AK111776

1083

360

40.07

4.4

10

MIKC*

40

OsMADS64

LOC_Os04g31804

NA

750

249

27.87

6.95

6

Mα

41

OsMADS65

LOC_Os01g69850

AK066160

495

164

18.36

10.28

4

MIKC*

42

OsMADS66

LOC_Os05g11380

NA

303

100

11.04

5.09

1

MIKCc

43

OsMADS67

LOC_Os12g31010

ABA98556

162

53

6.36

11.27

0

MIKCc

44

OsMADS68

LOC_Os11g43740

NA

1158

385

42.67

6.62

10

MIKC*

45

OsMADS69

LOC_Os08g20460

NA

555

184

20.10

9.29

0

Mα

46

OsMADS70

LOC_Os05g23780

NA

657

218

24.08

8.81

0

Mα

47

OsMADS71

LOC_Os06g22760

NA

717

238

27.03

10.09

0

Mα

48

OsMADS72

LOC_Os03g14850

NA

558

185

20.58

10.05

1

Mα

49

OsMADS73

LOC_Os12g21850

NA

585

194

21.19

11.3

0

Mα

50

OsMADS74

LOC_Os12g21880

NA

360

119

12.83

9.2

1

Mα

51

OsMADS75

LOC_Os06g30810

NA

633

210

22.76

4.79

0

Mα

52

OsMADS76

LOC_Os06g30830

NA

726

241

25.71

9.22

2

Mα

53

OsMADS77

LOC_Os09g02780

NA

537

178

19.30

4.55

0

Mα

54

OsMADS78

LOC_Os09g02830

NA

627

208

22.95

10.79

0

Mα

55

OsMADS79

LOC_Os01g74440

NA

627

208

20.90

10.72

0

Mα

56

OsMADS80

LOC_Os02g06860

 

861

286

30.76

6.59

0

Mα

57

OsMADS81

LOC_Os04g24790

NA

630

209

23.21

10.08

0

Mγ

58

OsMADS82

LOC_Os04g24800

NA

630

209

23.26

10.01

0

Mγ

59

OsMADS83

LOC_Os04g24810

NA

630

209

23.58

10.63

0

Mγ

60

OsMADS84

LOC_Os04g25870

NA

630

209

23.39

10.2

0

Mγ

61

OsMADS85

LOC_Os04g25920

NA

630

209

23.29

9.02

0

Mγ

62

OsMADS86

LOC_Os03g37670

NA

765

254

28.31

9.03

4

Mγ

63

OsMADS87

LOC_Os03g38610

NA

750

249

27.54

9.93

0

Mγ

64

OsMADS88

LOC_Os01g18420

NA

723

240

26.42

10.69

0

Mγ

65

OsMADS89

LOC_Os01g18440

NA

921

306

33.21

6.67

0

Mγ

66

OsMADS90

LOC_Os07g04170

NA

1473

490

54.43

4.86

4

Mβ

67

OsMADS91

LOC_Os01g11510

NA

1815

604

65.53

4.37

0

Mβ

68

OsMADS92

LOC_Os01g23750

NA

1221

406

42.53

4.38

0

Mβ

69

OsMADS93

LOC_Os01g23760

NA

1224

407

42.73

4.38

0

Mβ

70

OsMADS94

LOC_Os01g23770

NA

972

323

34.46

7.23

2

Mβ

71

OsMADS95

LOC_Os01g23780

NA

837

278

28.86

5.85

2

Mβ

72

OsMADS96

LOC_Os01g67890

NA

1452

483

52.84

6.94

0

Mβ

73

OsMADS97

LOC_Os01g68420

NA

819

272

28.79

4.41

0

Mβ

74

OsMADS98

LOC_Os01g68560

NA

1440

479

51.15

4.3

0

Mβ

75

OsMADS99

LOC_Os04g25930

NA

465

154

17.39

10.58

1

Mγ

  1. *Molecular wt and PI of OsMADS3 has been calculated using Gene Runner
  2. ** TIGR Model Represents only K box protein.