Skip to main content

Table 1 Genomic mapping of the validated ORESTES and sizes of the respective transcripts

From: Identification of unannotated exons of low abundance transcripts in Drosophila melanogaster and cloning of a new serine protease gene upregulated upon injury

ORE

GeneBank_Accn

Cytogenetic map

Exon/Intron/Intergenic

Transcriptαsizes (kb)

Closest annotated gene

Predicted transcript sizesβ of the closest gene

1

EG974100

7D3–5

Intron

10.0

fs(1)h

4.0

2

EG974085

88D1

Intergenic

8.4

CG33967

4.9

3

EG974101

25A3

Intergenic

2.1; 4.5

CG11928

0.3

4

EG974134

32A2

Intergenic

4.5

CG7329

1.6

5

EG974091

88A12

Exon/Intron

1.5

CG33329

1.2

6

EG974139

66A22-B3

Exon/Intron

1.8

nmo (CG7892)

Isoforms 2.2–3.1

7

EG974151

87E8

Intron

0.6

CG9813

Isoforms 2.1–2.8

8

EG974118

91C6-D1

Intron

0.9

CG7720

Isoforms 2.4–2.5

9

EG974120

9F2–4

Intron

2.0

Imp (CG1691)

Isoforms 2.8–3.9

10

EG974125

33A1–2

Intergenic

11.5

CG18265

6.4

11

EG974117

98F10

Intergenic

10.2

CG11874

3.2

12

EG974128

74E4–5

Intergenic

11.0

TORC

3.0

13

EG974088

25D6-E1

Intergenic

3.5

nompC (CG11020-RB)

5.1

14

EG974149

74D4

Intron

9.8

CycT (CG6292)

Isoforms 3.2–4.3

15

EG974105

33A1–2

Intron

1.8; 5.0; 9.8

crol (CG14938)

Isoforms 6.2–7.1

16

EG974142

48F6

Exon/Intergenic

2.2; 3.1; 4.0

CG13165

1.5

17

EG974111

90D1-E1

Intergenic

8.5

cpo (CG31243)

Isoforms 2.8–6.2

  1. α sizes of the transcripts detected by ORESTES; βsizes of the predicted transcripts encoded by genes located closest to the ORESTES mapping site, do not match any EST/cDNA sequence available up to October 2006 in the NCBI database