Genomic organization of duplicated major histocompatibility complex class I regions in Atlantic salmon (Salmo salar)

Table 1 EST match to genes in the Atlantic salmon MHC IA and IB regions

GENE	Abbreviation	Alias	EST/cDNA match IA	EST/cDNA match IB
Poliovirus receptor like2	PVRL2		CA342790	n.i.
Transcription factor 19	TCF19	SC1	?	n.i.
UNKNOWN	?		DW569240	n.i.
Tubulin	TUBB	OK/SW-cl.56	DW589685	n.i.
Flotillin	FLOT1		DY703577	n.i.
Zinc finger protein 384	ZNF384	CIZ	CB506768	n.i.
Kinesin family member C1	KIFC1	KNSL2/HSET	DW541824	BX313539
Zinc finger and BTB domain	ZBTB22	ZNF297/BING1	BX911712	BX911712
Death-associated protein 6	DAXX		DY736372	GRASP cluster 76574
Tapasin	TAPBP		DY735080	DW580568
MHC class I	ULA		DY699730	n.i.
MHC class I	UCA		n.i.	DW563256
MHC class I	UBA		UBA0201/0601	n.i.
Proteasome subunit, beta type, 8	PSMB8	LMP7	DY733578	AF184938
Proteasome subunit, beta type, 10	PSMB10	MECL1	DY740375	DY734168
Proteasome subunit, beta type, 9-like	PSMB9-like	LMP2-delta	DW574810	CN442539
Proteasome subunit, beta type, 9	PSMB9	LMP2	AF184935	AF184934
Transporter 2, ATP-binding cassette, sub-family B	TAP2	ABCB3	DW540744	Z83328
Bromodomain containing 2	BRD2	RING3	CA349460	CA349460
Hydroxysteroid (17-beta) dehydrogenase 8	HSD17B8	KE6, FABGL	n.i.	CK880913
Collagen, type XI, alpha 2	COL11A2		?	?
Retinoid × receptor, beta	RXRB		CK879311	CK357003
Chitin synthase			n.i.	DW550858
Solute carrier family 39 (zinc transporter), member 7	SLC39A7	KE4, FABGL	DW552689	DW563433
Reverse transcriptase	RT		DW561676	n.i.
Ring finger protein 1	RING1	RNF1	DY732022	n.i.
Ribosomal protein S18	RPS18	KE3	DY729361	n.i.
Vacuolar protein sorting 52	VSP52	SAC2	DY740244	n.i.
VHSV induced gene	VHSV		DW547400	n.i.

Mostly one match is listed per gene. Current abbreviation vs. older nomenclature is listed for each gene. All EST/cDNA sequences are from Genbank (? denotes unidentified EST, n.i. denotes not identified).

ISSN: 1471-2164