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Table 2 Genes having introns that do not match those predicted in public databases

From: cDNA sequences reveal considerable gene prediction inaccuracy in the Plasmodium falciparum genome

Ch

No Genes

New intr

Lost intr

Larger intr

Smaller intr

AS intr

Antisense

1

7

4

3

1

3

0

0

2

14

11

3

7

2

4

1

3

10

1

3

2

2

2

0

4

18

2

12

8

4

2

2

5

17

5

3

8

6

2

1

6

18

4

9

10

4

0

0

7

13

6

6

6

3

2

1

8

4

1

1

1

0

0

0

9

3

1

0

3

0

0

0

10

41

18

18

12

12

5

1

11

46

46

10

17

7

3

2

12

37

6

13

10

7

5

4

13

36

3

29

10

8

5

0

14

41

44

12

19

10

9

0

 

305

152

122

114

68

39

12

  1. Ch, chromosome; No genes, numbers of genes; New intr, numbers of genes with new introns; Lost intr, numbers of genes with predicted introns, but not confirmed with cDNA; Larger intr, number of genes with introns larger than predicted; Smaller intr, number of genes with introns smaller than predicted; AS intr, introns potentially alternatively spliced. Antisense, numbers of antisense transcripts based on the presence of conserved intron splice sites (GT-AG) in antisense orientation.
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BMC Genomics

ISSN: 1471-2164

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