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Table 3 Comparison of RScan and RSEARCH on the randomized genome

From: RScan: fast searching structural similarities for structured RNAs in large databases

Family1

# of True

Methods

Hits/TP/FN/FP2

Time

Thash3

Tsearch3

tRNA RF00005

49

RSEARCH

57/43/6/14

52 m 58 s

-

-

  

RScan

46/45/4/1

4 m 16 s

7 s

4 m 9 s

rRNA RF00001

20

RSEARCH

31/19/1/12

2 h 29 m 11 s

-

-

  

RScan

32/18/2/14

13 m 52 s

8 s

13 m 44 s

  1. 1The tRNA sequences and rRNA sequences are inserted in the randomized genomes.
  2. 2TP: true positive; FN: false negative; FP: false positive.
  3. 3T hash : the time required by building the hash table; T search : the time required by searching.
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BMC Genomics

ISSN: 1471-2164

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