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Table 4 Performances of RScan with different k and match-core

From: RScan: fast searching structural similarities for structured RNAs in large databases

k

match-core

# of True

Hits/TP/FN/FP

Thash (s)

Tsearch (s)

Time (s)

7

14

20

32/18/2/14

8

824

832

9

18

 

15/11/9/4

4

60

64

11

22

 

11/10/10/1

17

6

23

7

211

 

11/10/10/1

8

18

26

  1. 1This match-core is 3 times of k here and other match-cores are 2 times of corresponding k.
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BMC Genomics

ISSN: 1471-2164

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