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Table 7 Search RNA sequences in Rfam seed structural database

From: RScan: fast searching structural similarities for structured RNAs in large databases

Rfam ID of Query RScan Parameters1 Hits/ST/F52 Tsearch (s)
  k Mc Id ≥ % Ar ≥ %   
RF00005/AB042240.3/15036-15107 7 21 90 95 216/206/5 38
RF00001/M28193.1/1-119 7 21 90 95 72/70/5 79
RF00030/AY090594.1/1-274 9 27 80 95 2/2/2 140
RF00011/U64878.1/1-308 9 27 80 95 3/3/3 65
RF00010/U28101.1/1-327 9 27 80 95 18/16/5 42
RF00177/AF050603.1/1-475 9 27 80 95 74/74/5 884
  1. 1Mc: match-core; Id: identity; Ar: Alignment ratio.
  2. 2ST: number of same type of ncRNA with the query; F5: number of same type ncRNA in first 5 hits.