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Table 8 Search more RNA sequences in Rfam seed structural database

From: RScan: fast searching structural similarities for structured RNAs in large databases

Rfam ID of Query Parameters1 Hits/ST/F52 Tsearch (s) Mp3 QL4
  k Mc Id Ar     
RF00009/AF004373.1/1-320 9 27 80 95 1/1/1 10 0.426 320
RF00048/AF405669.1/4445-4505 7 21 90 95 4/3/3 3 0.013 61
RF00167/AL591981.1/205922-205823 7 21 90 95 3/3/3 41 0.140 100
RF00175/AF042101.1/695-812 7 21 90 95 64/64/5 44 0.205 118
RF00181/AL132709.5/131508-131439 7 21 90 95 5/5/5 6 0.886 70
RF00229/AY184219.1/389-639 9 27 80 95 21/21/5 35 0.314 251
RF00342/AP001273.4/3902-3830 7 21 90 95 6/5/5 4 0.013 73
RF00376/AY451114.1/148-231 7 21 90 95 248/248/5 22 0.013 84
RF00436/AL591676.10/16205-16259 7 21 90 95 31/2/2 27 0.062 55
RF00480/AY455785.1/1517-1568 7 21 90 95 453/427/5 10 0.025 52
  1. 1Mc: match-core; Id: identity ≥ %; Ar: Alignment ratio ≥ %.
  2. 2ST: number of same type of ncRNA with the query; F5: number of same type ncRNA in first 5 hits.
  3. 3Mp: p-value of minimum free energy of queries' predicted secondary structures.
  4. 4QL: length of query.