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Table 3 Counts of alternative splice variants

From: Mapping of oxidative stress responses of human tumor cells following photodynamic therapy using hexaminolevulinate

Filtering criteria 1 h 2 h 4 h
Number of alternative spliced genes, cut off fold change ≥1 34 13 442
Number of alternative spliced genes, cut off fold change ≥2 14 2 256
Number of alternative spliced genes, cut off fold change [1–1.99] 20 10 192
Upregulated alternative variants, cut off fold change ≥1 10 2 125
Upregulated alternative variants, cut off fold change ≥ 2 7 2 101
Upregulated alternative variants, cut off fold change [1–1.99] 3 1 27
Dowregulated alternative variants, cut off fold change ≥ 1 24 9 261
Dowregulated alternative variants, cut off fold change ≥ 2 6 1 138
Dowregulated alternative variants, cut off fold change [1–1.99] 18 8 126
Alternatives up and down for the same gene, cut off fold change ≥ 1 0 2 56
Alternatives up and down for the same gene, cut off fold change [1–1.99] 0 0 17
% of down regulated alternatives, cut off fold change ≥ 1 70.6 69.2 59.0
% of down regulated alternatives, cut off fold change ≥ 2 42.9 50.0 53.9
% of down regulated alternatives, cut off fold change [1–1.99] 90.0 80.0 65.6