Skip to main content

Table 1 Relative allele frequences of SNPs genotyped in 19 hay fever patients with extreme IgE phenotype and 19 non-atopic controls.

From: Optimization of candidate-gene SNP-genotyping by flexible oligonucleotide microarrays; analyzing variations in immune regulator genes of hay-fever samples

SNP Nr.

SNP name

SNP identifier

Allele 1

Relative frequence of allele 1 in case sample

Relative frequence of allele 1 in control sample

1

IL-2_1

rs2069772

T

0.58

0.83

2

IL-2_2

rs2069763

G

0.67

0.61

3

IL-10_4

rs1800894

G

1.00

1.00

4

IL-10_5

rs1800871

C

0.77

0.83

5

IL-10_6

rs1800872

C

0.77

0.83

6

TNFA_7

rs11565

C

0.85

0.92

7

TNFA_8

rs673

A

0.03

0.03

8

TNFA_9

rs1800629

A

0.16

0.05

9

TNFA_10

rs361525

A

0.11

0.03

10

IL4_11

rs2243246

T

0.95

0.86

11

IL4_12

rs2243250

C

1.00

1.00

12

IL4_13

rs34185442

C

1.00

1.00

13

IL4_14

rs2970874

C

1.00

0.97

14

IL6_16

rs1800797

G

0.63

0.60

15

IL6_16

rs1800796

G

1.00

1.00

16

IL6_17

rs1800795

G

0.63

0.47

17

IL4R_18

rs1801275

A

0.87

0.68

18

IL4R_19

rs1805011

C

0.05

0.13

19

IL4R_20

rs8832

G

0.75

0.62

20

IL4R_21

rs1805015

T

1.00

0.89

21

IL4R_22

rs1805010

A

0.70

0.56

22

IL12p40_23

rs3124

C

1.00

1.00

23

STAT6_24

rs167769

A

0.32

0.20

24

STAT6_25

rs324015

G

0.72

0.82

25

STAT6_26

rs703817

G

0.50

0.38

26*

STAT6_27

rs4559

A

0.27

0.25

27

IFNG_28

rs2234685

A

1.00

1.00

28

IFNG_29

rs1861493

T

0.69

0.69

29

IFNG_30

rs2234687

C

1.00

1.00

30*

IFNG_31

rs2430561

T

0.50

0.38

31

IFNGR2_34

rs1802585

C

1.00

1.00

32

IFNGR2_35

rs1059293

T

0.39

0.50

33

IFNGR2_36

rs9808753

A

0.86

0.94

34

IRF1_37

rs839

G

0.74

0.89

35*

IRF1_38

rs9282762

A

0.42

0.60

36*

IRF2_40

rs1131553

G

0.32

0.50

37

IL8_41

rs1175

A

0.41

0.47

38

IL8_42

rs2227307

G

0.42

0.50

39

IL13_43

rs20541

G

0.89

0.79

40

IL13_44

rs1800925

C

0.88

0.82

41*

IL18_47

rs1946518

G

0.63

0.67

42*

IL18_48

rs1946519

C

0.87

0.71

43*

IL1B_49

rs16944

T

0.16

0.15

44

IL1B_50

rs1143627

C

0.36

0.38

45

IL1B_51

rs1799916

T

1.00

1.00

46

IL1A_52

rs17561

G

0.64

0.74

47

IL1A_53

rs1800587

T

0.36

0.31

48

IL9_56

rs1799962

A

1.00

1.00

49

TNFR1_60

rs1800692

C

0.63

0.53

50

TNFR1_61

rs1800693

A

0.53

0.72

51*

TNFRSF6_62

rs2234768

T

0.00

1.00

52

LTA_65

rs1800683

A

1.00

1.00

53

LTA_66

rs1041981

A

0.29

0.19

54

LTA_67

rs909253

G

0.25

0.19

55

IL1RN_68

rs2234676

G

0.86

0.74

56

IL1RN_69

rs419598

T

0.87

0.88

57

CTLA4_70

rs2384137

G

0.11

0.06

58

NFKBIA_72

rs1800439

G

0.53

0.56

59

IL8RB_77

rs2230054

T

0.06

0.17

60

ICAM1_78

rs1799969

A

1.00

0.97

61*

ICAM1_79

rs5498

G

0.61

0.64

62

IL3_81

rs40401

G

0.95

0.94

63

IL3_82

rs31480

G

0.84

0.82

64

MCP1_87

rs4611511

A

0.89

0.92

65

MCP1_88

rs34020694

A

0.87

0.87

66

RANTES_89

rs2107538

G

0.88

0.91

67

RANTES_90

rs2280788

C

0.95

0.95

68

CCR5_91

rs1799863

A

0.03

0.00

69

CCR2_94

rs1799865

T

0.50

0.56

70

C5_95

rs17611

G

0.66

0.50

71

C5_96

rs17612

C

0.11

0.06

72

P2X7_97

rs3751143

C

0.06

0.03

73

IL7R_106

rs1494555

G

0.34

0.35

74

PRF1_107

rs885822

T

0.83

0.94

75

TLR2_108

rs1804965

G

1.00

1.00

76

TCL1B_109

rs1064017

G

0.44

0.56

77

CCR5_110

rs1800452

G

1.00

1.00

78

IL11_111

rs1126757

A

0.38

0.44

79

IL11_112

rs2298885

G

0.61

0.85

80

IL8RA_117

rs2234671

G

0.40

0.44

81*

IL1L1_118

rs1800930

A

0.78

0.83

82*

CD36_119

rs1334512

G

0.96

0.85

83

VDR_121

rs1544410

G

0.31

0.44

84*

VDR_122

rs7975232

T

0.73

0.54

85

IL5RA_123

rs2290610

A

0.83

0.61

86

IL5R_124

rs2069812

C

0.79

0.78

87

IL5R_125

rs2069818

C

1.00

1.00

88

CX3CR1_126

rs3732379

G

0.68

0.67

89

CX3CR1_127

rs3732378

C

0.78

0.74

90*

TNFRSF1B_128

rs1061622

T

0.88

0.65

91

TNFRSF1B_129

rs1061624

A

0.31

0.47

92

TNFRSF1B_130

rs3397

T

0.88

0.79

93*

TNFRSF1A_131

rs887477

G

0.54

0.35

94

TNFRSF1A_132

rs4149570

G

0.76

0.53

95

IL4R_135

rs1805016

T

1.00

1.00

96

IL6_137

rs20069860

A

0.97

1.00

97*

IL9_138

rs20069885

C

1.00

0.96

98*

NKFB_139

rs1020759

C

1.00

1.00

99

GATA3_141

rs57013

A

0.72

0.58

  1. * The SNP detection reproducibility <80%