BMC Genomics

Table 1 Spearman rank correlation coefficients between linear 10% FAexpTRL pseudomolecule segments comparing % MegaBLAST alignments and average scores for each test database.

From: Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation

Database		Lp_MF
Lp_MF	a	a	Lp_MF
Lp_MF	b	0.465	b	Zm_MF
Zm_MF	a	0.729	0.489	a	Zm_MF
Zm_MF	b	0.630	0.672	0.577	b	Zm_TA
Zm_TA	a	0.712	0.526	0.904	0.603	a	Zm_TA
Zm_TA	b	0.248**	0.307	0.406	0.394	0.448	b	Hv_TA
Hv_TA	a	0.711	0.495	0.756	0.554	0.818	0.450	a	Hv_TA
Hv_TA	b	0.256**	0.391	0.479	0.462	0.522	0.809	0.456	b	Gm_TA
Gm_TA	a	0.313	0.327	0.545	0.275**	0.603	0.566	0.550	0.550	a	Gm_TA
Gm_TA	b	ns	ns	ns	ns	ns	ns	ns	ns	ns	b	At_TA
At_TA	a	0.320	0.242**	0.449	0.259**	0.490	0.620	0.509	0.056	0.702	ns ¹	a
At_TA	b	ns	ns	ns	ns	ns	ns	ns	ns	ns	0.672	ns

a = % alignments
b = average scores
Significant levels: p < 0.001 (bold), ** = p < 0.01; * = p < 0.05; ns = p > 0.05
¹ p = 0.051

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