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Table 2 FAexpTRL blocks associated with high MegaBLAST scores from pseudomolecules 4 and 10

From: Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation

   Test database MegaBLAST score
FAexpTRL Annotation Lp_MF Zm_MF Zm_TA Hv_TA Gm_TA At_TA
LOC_Os04g16450 aquaporin PIP2.8, putative, expressed 470 357 351 838 121 121
LOC_Os04g16680 Sedoheptulose-1,7-bisphosphatase, chloroplast precursor, putative, expressed 289 995 1112 1112 184 129
LOC_Os04g16740 ATP synthase alpha chain, putative, expressed 1037 644 743 1126 856 815
LOC_Os04g16750 Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed 613 868 644 628 470 462
LOC_Os04g16760 Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed 503 1465 1100 323 357 252
LOC_Os04g16770 Photosystem Q, putative, expressed 936 190 539 1891 848 987
LOC_Os04g16780 Chloroplast 30S ribosomal protein S3, putative, expressed 129 287 474 498 97.6 141
LOC_Os04g16790 DNA-directed RNA polymerase alpha chain, putative, expressed 525 - 1086 1219 216 206
LOC_Os04g16819 DNA-directed RNA polymerase beta chain, putative, expressed 264 1265 410 394 105 188
LOC_Os04g16820 DNA-directed RNA polymerase beta chain, putative, expressed 1072 - 1096 460 266 -
LOC_Os10g21200 Photosystem Q, putative, expressed 936 1037 539 1883 840 979
LOC_Os10g21270 ATP synthase beta chain, putative, expressed 991 1524 1376 527 573 793
LOC_Os10g21280 Ribulose bisphosphate carboxylase large chain precursor, putative, expressed 936 591 1766 1701 531 981
LOC_Os10g21310 Photosystem II P680 chlorophyll A apoprotein, putative, expressed 561 287 551 170 206 -
LOC_Os10g21330 DNA-directed RNA polymerase alpha chain, putative, expressed 525 184 1070 1203 216 206
LOC_Os10g38229 Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed 496 914 1092 323 357 252
LOC_Os10g38248 Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed 1033 949 936 906 716 1076
LOC_Os10g38270 ATP synthase alpha chain, putative, expressed 1029 - 698 1098 848 815
LOC_Os10g38292 Chloroplast ATP synthase a chain precursor, putative, expressed 109 258 - 1096 545 614
Mean MegaBLAST score   214 260 504 473 155 151
  1. - = no significant MegaBLAST alignment with Os_CD database