Table 4 Maximal expression patterns according to organ type of Arabidopsis CDS from the At_CD database significantly aligned with FAexpTRL from the 'top 10%' alignment (red zone) regions of the pseudomolecules.
'Top 10%' alignments | Random At_CD loci | ||||
|---|---|---|---|---|---|
Plant Organ1 | No. | % (A) | No. | % (B) | A-B |
lateral root cap | 35 | 8.0 | 53 | 3.4 | 4.6 |
callus | 39 | 9.0 | 75 | 4.8 | 4.2 |
cell suspension | 30 | 6.9 | 56 | 3.6 | 3.3 |
root tip | 53 | 12.2 | 139 | 9.0 | 3.2 |
node | 13 | 3.0 | 22 | 1.4 | 1.6 |
elongation zone | 7 | 1.6 | 9 | 0.6 | 1.0 |
xylem | 23 | 5.3 | 68 | 4.4 | 0.9 |
endodermis | 13 | 3.0 | 35 | 2.3 | 0.7 |
endodermis + cortex | 9 | 2.1 | 21 | 1.4 | 0.7 |
stele | 8 | 1.8 | 24 | 1.5 | 0.3 |
shoot apex | 16 | 3.7 | 54 | 3.5 | 0.2 |
rosette | 1 | 0.2 | 1 | 0.1 | 0.1 |
root hair zone | 23 | 5.3 | 81 | 5.2 | 0.1 |
influorescence | 0 | 0 | 0 | 0 | 0 |
ovary | 0 | 0 | 1 | 0.1 | -0.1 |
cotyledons | 9 | 2.1 | 34 | 2.2 | -0.1 |
stem | 2 | 0.5 | 10 | 0.6 | -0.1 |
pedicel | 7 | 1.6 | 28 | 1.8 | -0.2 |
seedling | 0 | 0 | 5 | 0.3 | -0.3 |
adult leaf | 3 | 0.7 | 16 | 1.0 | -0.3 |
juvenile leaf | 0 | 0 | 6 | 0.4 | -0.4 |
epidermis atrichoblasts | 12 | 2.8 | 49 | 3.2 | -0.4 |
roots | 1 | 0.2 | 10 | 0.6 | -0.4 |
cork | 7 | 1.6 | 33 | 2.1 | -0.5 |
silique | 4 | 0.9 | 23 | 1.5 | -0.6 |
stigma | 0 | 0 | 9 | 0.6 | -0.6 |
stamen | 11 | 2.5 | 49 | 3.2 | -0.7 |
flower | 0 | 0 | 10 | 0.6 | -0.6 |
carpel | 0 | 0 | 10 | 0.6 | -0.6 |
petiole | 1 | 0.2 | 16 | 1.0 | -0.8 |
cauline leaf | 8 | 1.8 | 41 | 2.6 | -0.8 |
hypocotyl | 3 | 0.7 | 25 | 1.6 | -0.9 |
seed | 14 | 3.2 | 66 | 4.3 | -1.1 |
lateral root | 6 | 1.4 | 38 | 2.5 | -1.1 |
sepal | 2 | 0.5 | 25 | 1.6 | -1.1 |
hypocotyl | 1 | 0.2 | 25 | 1.6 | -1.4 |
petal | 8 | 1.8 | 51 | 3.3 | -1.5 |
radicle | 0 | 0 | 25 | 1.6 | -1.6 |
pollen | 53 | 12.2 | 224 | 14.5 | -2.3 |
senescent leaf | 13 | 3.0 | 83 | 5.4 | -2.4 |
Total | 435 | 1550 | |||