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Table 4 Maximal expression patterns according to organ type of Arabidopsis CDS from the At_CD database significantly aligned with FAexpTRL from the 'top 10%' alignment (red zone) regions of the pseudomolecules.

From: Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation

  'Top 10%' alignments Random At_CD loci  
Plant Organ1 No. % (A) No. % (B) A-B
lateral root cap 35 8.0 53 3.4 4.6
callus 39 9.0 75 4.8 4.2
cell suspension 30 6.9 56 3.6 3.3
root tip 53 12.2 139 9.0 3.2
node 13 3.0 22 1.4 1.6
elongation zone 7 1.6 9 0.6 1.0
xylem 23 5.3 68 4.4 0.9
endodermis 13 3.0 35 2.3 0.7
endodermis + cortex 9 2.1 21 1.4 0.7
stele 8 1.8 24 1.5 0.3
shoot apex 16 3.7 54 3.5 0.2
rosette 1 0.2 1 0.1 0.1
root hair zone 23 5.3 81 5.2 0.1
influorescence 0 0 0 0 0
ovary 0 0 1 0.1 -0.1
cotyledons 9 2.1 34 2.2 -0.1
stem 2 0.5 10 0.6 -0.1
pedicel 7 1.6 28 1.8 -0.2
seedling 0 0 5 0.3 -0.3
adult leaf 3 0.7 16 1.0 -0.3
juvenile leaf 0 0 6 0.4 -0.4
epidermis atrichoblasts 12 2.8 49 3.2 -0.4
roots 1 0.2 10 0.6 -0.4
cork 7 1.6 33 2.1 -0.5
silique 4 0.9 23 1.5 -0.6
stigma 0 0 9 0.6 -0.6
stamen 11 2.5 49 3.2 -0.7
flower 0 0 10 0.6 -0.6
carpel 0 0 10 0.6 -0.6
petiole 1 0.2 16 1.0 -0.8
cauline leaf 8 1.8 41 2.6 -0.8
hypocotyl 3 0.7 25 1.6 -0.9
seed 14 3.2 66 4.3 -1.1
lateral root 6 1.4 38 2.5 -1.1
sepal 2 0.5 25 1.6 -1.1
hypocotyl 1 0.2 25 1.6 -1.4
petal 8 1.8 51 3.3 -1.5
radicle 0 0 25 1.6 -1.6
pollen 53 12.2 224 14.5 -2.3
senescent leaf 13 3.0 83 5.4 -2.4
Total 435   1550   
  1. 1 Plant organs definitions as used in the Genevestigator™ database [57].