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Table 6 Representation of FAexpTRL large gene families in the 'top' and 'bottom' 10% MWs

From: Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation

FAexp annotation large gene family1 Annotation type in all FAexpTRL Annotation type in top2 10% MWs Annotation type in bottom2 10% MWs
  No. % (n= 17108)3a No. % (n = 3057)3b No. % (n = 508)3c
Protein kinase domain containing protein, expressed 412 2.41 68 2.22 22 4.33
F-box domain containing protein, expressed 330 1.93 3 0.10 69 13.58
Leucine Rich Repeat family protein, expressed 318 1.86 20 0.65 50 9.84
pentatricopeptide, putative, expressed 264 1.54 16 0.52 1 0.20
NB-ARC domain containing protein, expressed 245 1.43 1 0.03 76 14.96
Zinc finger, C3HC4 type family protein, expressed 218 1.27 36 1.18 1 0.20
Cytochrome P450 family protein, expressed 184 1.08 22 0.72 8 1.57
RNA recognition motif family protein, expressed 117 0.68 16 0.52 0 0.00
  1. 1Large gene family = Families > 100 FAexpTRL with identical annotations.
  2. 2MWs which are in the top/bottom 10% for both % sequence alignments and average scores.
  3. 3 n = a) total number of FAexpTRL; b) number of FAexpTRL in top 10% alignment MWs with significant alignments identified in each of the Lp_MF, Zm_MF, Zm_TA and Hv_TA (monocot) databases; c) number of FAexpTRL in bottom 10% MAWs with no significant alignments identified in any of the monocot databases.