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Table 7 DNA databases

From: Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation

Species Sequence type Abbreviation No. sequences Total base pairs Average sequence length Source
Oryza sativa CDS Os_CD 62827 85784595 1365 TIGR
Lolium perenne MF Lp_MF 471749 236911323 502 ViaLactia
Zea mays MF Zm_MF 450197 338653263 752 NCBI
Zea mays TA Zm_TA 169087 112449533 665 TIGR
Hordeum_vulgare TA Hv_TA 123351 83655311 678 TIGR
Glycine max TA Gm_TA 114693 65479263 571 TIGR
Arabidopsis_thaliana TA At_TA 148368 92081906 621 TIGR
Arabidopsis_thaliana CDS At_CD 30690 38043579 1240 TAIR
  1. MF = methylation filtered
  2. CDS = predicted complete coding sequences
  3. TA = transcript assemblies
  4. ViaLactia = ViaLactia Biosciences [60].
  5. NCBI = National Center for Biotechnology Information [61]. Download command line = '(txid4577 [ORGN] AND Quackenbush [AUTH] AND "methylation" [ALL])' obtained from Gramene [9].
  6. TIGR = The Institute for Genome Research [52, 62].
  7. TAIR = The Arabidopsis Information Resource [11].