Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation

Table 7 DNA databases

Species	Sequence type	Abbreviation	No. sequences	Total base pairs	Average sequence length	Source
Oryza sativa	CDS	Os_CD	62827	85784595	1365	TIGR
Lolium perenne	MF	Lp_MF	471749	236911323	502	ViaLactia
Zea mays	MF	Zm_MF	450197	338653263	752	NCBI
Zea mays	TA	Zm_TA	169087	112449533	665	TIGR
Hordeum_vulgare	TA	Hv_TA	123351	83655311	678	TIGR
Glycine max	TA	Gm_TA	114693	65479263	571	TIGR
Arabidopsis_thaliana	TA	At_TA	148368	92081906	621	TIGR
Arabidopsis_thaliana	CDS	At_CD	30690	38043579	1240	TAIR

MF = methylation filtered
CDS = predicted complete coding sequences
TA = transcript assemblies
ViaLactia = ViaLactia Biosciences [60].
NCBI = National Center for Biotechnology Information [61]. Download command line = '(txid4577 [ORGN] AND Quackenbush [AUTH] AND "methylation" [ALL])' obtained from Gramene [9].
TIGR = The Institute for Genome Research [52, 62].
TAIR = The Arabidopsis Information Resource [11].

ISSN: 1471-2164