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Table 3 List of predicted potential operator sites

From: GntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization

Subfamily

Regulator

Potential Operator sequence

FadR

MSMEG_0124

--CCACTGT TCAAC GA GCG---

 

MSMEG_0179

-AAGAT CGT CCGAC AA TT----

 

MSMEG_0454

--CAAT CGT CATAC GA TTG---

 

MSMEG_0596

--GTGT GGT CAGAC CA CAC---

 

MSMEG_0895

-----T CGT GGGAC GA------

 

MSMEG_2164

-----CCGT TGAAC GG------

 

MSMEG_2480

---ACCGGT GGCAC CA GGGT--

 

MSMEG_2599

----ACCGT GGGAC GGT-----

 

MSMEG_2682

-----TGG CAAGAC CA------

 

MSMEG_2910

CCTTGATGT CCCAC AA CG----

 

MSMEG_3527

-----T GGT AAGAC CA------

 

MSMEG_3822

-----T TGT TACTC AA------

 

MSMEG_3959

--TTGCCG CGCGAC AA------

 

MSMEG_3980

-----T GGT GATAC ACCA----

 

MSMEG_4057

----TT CGT GTCAC AA GTCGAA

 

MSMEG_6789

----TT TGT GTCAC AA A-----

HutC

MSMEG_0268

-----ACCGT CTA CA TCGT---

 

MSMEG_0650

------TGGT CTA TAC CA----

YtrA

MSMEG_5174

---G CCAT CATGTA GTGC----

  1. Preferred nucleotides in potential operator sites are printed in bold