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Table 1 Genes chosen for analysis of cis sequence effects on gene expression

From: cis sequence effects on gene expression

Gene Mean Normalized Signal Stand Dev Intra line CC (%) Inter line CV (%) Size (bp) N SNPs available
ALDH2 134.3 84.2 94.9 63.6 43,438 4
BCL2L1 274.8 79.1 62.8 26.2 58,393 3
BIC 2451.0 585.9 63.9 22.2 12,968 22
BIRC3 813.4 244.4 70.1 27.6 20,271 2
BLM 177.3 59.4 81.4 32.7 97,996 24
CCNA2 343.7 111.1 66.1 27.3 6,367 4
CCND3 807.7 257.4 86.3 30.5 6,880 6
CDKN1B 161.2 44.6 75.4 24.0 4,994 3
CHEK1 173.2 62.4 75.9 31.2 29,300 2
CYP1B1 310.7 206.2 90.6 66.2 8,546 50
EGR1 145.9 73.2 71.4 45.9 3,823 2
FCGR2B 149.2 56.6 85.0 36.9 14,867 9
GADD45A 314.5 90.2 82.5 27.9 3,136 4
IFNGR1 662.0 272.4 92.1 40.4 21,885 2
IFNGR2 852.5 224.8 85.2 24.3 34,624 5
IRF1 267.4 57.3 64.7 20.3 7,647 5
JAK1 161.5 44.2 71.7 25.1 51,778 20
LMO2 187.4 124.5 97.1 68.4 33,711 8
LTA 2196.5 667.3 83.5 29.8 2,005 7
MGMT 417.0 131.5 93.8 31.3 230,861 6
MSH2 190.0 52.5 66.8 23.6 80,097 3
MYBL2 277.6 116.7 74.8 36.4 49,413 25
MYC 512.4 191.1 85.9 34.9 5,170 2
NBS1 163.8 40.4 70.4 23.6 51,187 19
OAS1 490.8 153.5 86.3 30.2 12,956 5
PCNA 2523.3 685.6 71.0 23.6 11,669 3
PHB 178.4 44.3 64.9 20.9 10,822 3
PIM1 145.6 51.2 74.3 33.0 5,218 7
PTEN 297.7 65.5 71.8 20.1 103,207 5
TNF 1097.3 246.4 83.4 22.2 2,762 12
TP73L 110.1 89.0 97.0 81.0 265,849 26
TYMS 1554.5 399.1 69.8 22.9 15,841 19