Table 1 Genes chosen for analysis of cis sequence effects on gene expression
Gene | Mean Normalized Signal | Stand Dev | Intra line CC (%) | Inter line CV (%) | Size (bp) | N SNPs available |
|---|---|---|---|---|---|---|
ALDH2 | 134.3 | 84.2 | 94.9 | 63.6 | 43,438 | 4 |
BCL2L1 | 274.8 | 79.1 | 62.8 | 26.2 | 58,393 | 3 |
BIC | 2451.0 | 585.9 | 63.9 | 22.2 | 12,968 | 22 |
BIRC3 | 813.4 | 244.4 | 70.1 | 27.6 | 20,271 | 2 |
BLM | 177.3 | 59.4 | 81.4 | 32.7 | 97,996 | 24 |
CCNA2 | 343.7 | 111.1 | 66.1 | 27.3 | 6,367 | 4 |
CCND3 | 807.7 | 257.4 | 86.3 | 30.5 | 6,880 | 6 |
CDKN1B | 161.2 | 44.6 | 75.4 | 24.0 | 4,994 | 3 |
CHEK1 | 173.2 | 62.4 | 75.9 | 31.2 | 29,300 | 2 |
CYP1B1 | 310.7 | 206.2 | 90.6 | 66.2 | 8,546 | 50 |
EGR1 | 145.9 | 73.2 | 71.4 | 45.9 | 3,823 | 2 |
FCGR2B | 149.2 | 56.6 | 85.0 | 36.9 | 14,867 | 9 |
GADD45A | 314.5 | 90.2 | 82.5 | 27.9 | 3,136 | 4 |
IFNGR1 | 662.0 | 272.4 | 92.1 | 40.4 | 21,885 | 2 |
IFNGR2 | 852.5 | 224.8 | 85.2 | 24.3 | 34,624 | 5 |
IRF1 | 267.4 | 57.3 | 64.7 | 20.3 | 7,647 | 5 |
JAK1 | 161.5 | 44.2 | 71.7 | 25.1 | 51,778 | 20 |
LMO2 | 187.4 | 124.5 | 97.1 | 68.4 | 33,711 | 8 |
LTA | 2196.5 | 667.3 | 83.5 | 29.8 | 2,005 | 7 |
MGMT | 417.0 | 131.5 | 93.8 | 31.3 | 230,861 | 6 |
MSH2 | 190.0 | 52.5 | 66.8 | 23.6 | 80,097 | 3 |
MYBL2 | 277.6 | 116.7 | 74.8 | 36.4 | 49,413 | 25 |
MYC | 512.4 | 191.1 | 85.9 | 34.9 | 5,170 | 2 |
NBS1 | 163.8 | 40.4 | 70.4 | 23.6 | 51,187 | 19 |
OAS1 | 490.8 | 153.5 | 86.3 | 30.2 | 12,956 | 5 |
PCNA | 2523.3 | 685.6 | 71.0 | 23.6 | 11,669 | 3 |
PHB | 178.4 | 44.3 | 64.9 | 20.9 | 10,822 | 3 |
PIM1 | 145.6 | 51.2 | 74.3 | 33.0 | 5,218 | 7 |
PTEN | 297.7 | 65.5 | 71.8 | 20.1 | 103,207 | 5 |
TNF | 1097.3 | 246.4 | 83.4 | 22.2 | 2,762 | 12 |
TP73L | 110.1 | 89.0 | 97.0 | 81.0 | 265,849 | 26 |
TYMS | 1554.5 | 399.1 | 69.8 | 22.9 | 15,841 | 19 |