|
Gene
|
N SNPs in N = 30 Cauc sample
|
N tag or singleton SNPs
|
N tag SNPs
|
N singleton SNPs
|
N haplotypes in trees
|
|---|
|
ALDH2
|
4
|
2
|
1
|
1
|
3
|
|
BCL2L1
|
3
|
2
|
0
|
2
|
3
|
|
BIC
|
22
|
9
|
3
|
6
|
8
|
|
BIRC3
|
2
|
2
|
0
|
2
|
3
|
|
BLM
|
24
|
9
|
5
|
4
|
7
|
|
CCNA2
|
4
|
3
|
0
|
3
|
4
|
|
CCND3
|
6
|
4
|
0
|
4
|
7
|
|
CDKN1B
|
3
|
3
|
0
|
3
|
6
|
|
CHEK1
|
2
|
2
|
0
|
2
|
3
|
|
CYP1B1
|
50
|
14
|
7
|
7
|
19
|
|
EGR1
|
2
|
0
|
0
|
0
|
na
|
|
FCGR2B
|
9
|
6
|
1
|
5
|
10
|
|
GADD45A
|
4
|
0
|
0
|
0
|
na
|
|
IFNGR1
|
2
|
2
|
0
|
2
|
3
|
|
IFNGR2
|
5
|
2
|
0
|
2
|
3
|
|
IRF1
|
5
|
1
|
1
|
0
|
na
|
|
JAK1
|
20
|
5
|
2
|
2
|
7
|
|
LMO2
|
8
|
8
|
0
|
8
|
13
|
|
LTA
|
7
|
10
|
4
|
6
|
9
|
|
MGMT
|
6
|
4
|
2
|
2
|
6
|
|
MSH2
|
3
|
1*
|
na
|
na
|
na
|
|
MYBL2
|
25
|
8
|
4
|
4
|
6
|
|
MYC
|
2
|
1*
|
na
|
na
|
na
|
|
NBS1
|
19
|
4
|
2
|
2
|
7
|
|
OAS1
|
5
|
1
|
1
|
0
|
na
|
|
PCNA
|
3
|
2
|
0
|
2
|
3
|
|
PHB
|
3
|
3
|
0
|
3
|
4
|
|
PIM1
|
7
|
2
|
1
|
1
|
3
|
|
PTEN
|
5
|
3
|
0
|
3
|
4
|
|
TNF
|
12
|
10
|
4
|
6
|
9
|
|
TP73L
|
26
|
9
|
3
|
7
|
13
|
|
TYMS
|
19
|
4
|
3
|
1
|
4
|
- *There was one SNP with maf > 5% at these two genes; tag SNP analysis was not performed. The single SNP with maf > 5% at each gene was used for SNP-based analyses.
