Skip to main content

Table 3 Functional modules for gastric cancer (FDR ≤ 0.1)

From: GO-2D: identifying 2-dimensional cellular-localized functional modules in Gene Ontology

Dimension Biological Process Name (# of genes d in BP) Cellular Component Name (# of genes d in CC) # of genes d in 2D module Observed P Value
1Db rRNA processing (46)    1.07E-05
  regulation of cyclin dependent protein kinase activity (28) --- --- 2.26E-05
  Digestion (26)    6.04E-04
  traversing start control point of mitotic cell cycle (5)    1.18E-03
2Dc rRNA processing (46) protein complex (1135) 22 2.22E-04
  rRNA processing (46) nucleolus (73) 20 1.34E-03
  regulation of cyclin dependent protein kinase activity (28) nucleus (2425) 18 5.27E-05
  Digestion (26) cell (6889) 16 4.09E-04
  traversing start control point of mitotic cell cycle (5) nucleus (2425) 5 1.18E-03
  electron transport (229) endoplasmic reticulum (378) 49 1.53E-04
  electron transport (229) membrane (2978) 102 2.66E-04
  electron transport (229) microsome (76) 29 7.80E-04
  cell cycle arrest (50) cytoplasm (2362) 14 4.77E-04
  negative regulation of cell proliferation (107) cytoplasm (2362) 37 8.41E-04
  NLS-bearing substrate import into nucleus (12) nuclear part (465) 5 1.18E-03
  one-carbon compound metabolism (24) intracellular membrane-bound organelle (3675) 7 1.67E-03
  1. Note: See the footnotes of Table 2.
\