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Table 1 Transcription factors and their binding site motifs

From: Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors

TF Familya

Binding siteb

CI thresholdc

Accessiond

Namee

Reff

C2C2-DOF

WAAAG

9.8

At3g50410

OBP1

[55]

   

At5g60850

OBP4

 
   

At1g26790

-

 
   

At1g69570

DOF1.1

 
   

At5g39660

DOF5.2

 
   

At3g47500

DOF3.3

 

WRKY

TTTGACY

0.7

At4g01250

WRKY22

[49]

   

At2g38470

WRKY33

 
   

At1g80840

WRKY40

 
   

At2g46400

WRKY46

 
   

At4g23810

WRKY53

 
   

At4g24240

WRKY7

 
   

At3g56400

WRKY70

 

MYB

AAMAATCT

0.3

At2g46830

CCA1

[56]

AP2/EREBP

AGCCGCC

10-2

At4g17500

ERF1

[57]

   

At5g47230

ERF5

 

BZIP

CACGTGG (or) TGACGTGG (or) ATGACGTCAT

 

At1g49720

ABRE

 
  

10-2

At3g17609

-

 
  

10-2

At2g31370

BZIP59

[58]

  

10-3

At4g01120

GBF2

[59]

   

At2g46270

BZIP55

 
   

At4g34590

ATB2

 

BHLH

CANNTG

6.8

At3g05800

-

[60]

NAC

CATGTG

0.5

At1g01720

ATAF1

[48]

   

At3g49530

-

 
   

At4g27410

RD26

 

MADS

CCWWWWWWGG

0.1

At2g45660

AGL20

[61]

AP2

CCGAC

0.5

At4g25480

CBF3

[62]

   

At4g25470

CBF1

 

TCP2

GTGGNCCC

0.2

At4g18390

-

[63]

HSF

NGAANNTTCN (or) NTTCNNGAAN

0.8

At3g24520

-

[64]

  

0.7

At4g18880

HSF21

 
   

At1g67970

HSF5

 
  1. Transcription factors selected for further analysis. a: Transcription factor family. b: Binding site or motif to which the TF binds, where 'W' = 'A'/'T'; 'M' = 'A'/'C'; 'Y' = 'C'/'T'; 'N' = 'A'/'T'/'G'/'C'. c: Minimum number of copies required to be found within 1 kb upstream of a gene in order for the motif to be considered as over-represented according to the confidence interval threshold. d:Locus ID of the gene. e: Common name of the TF. e: Literature reference.