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Table 2 List of distinctive 33 genes among types A, B (1, 2) and B3

From: Genome-wide genetic aberrations of thymoma using cDNA microarray based comparative genomic hybridization

ID Symbol Cytoband Name type A type B (1,2) type B3
     gain loss gain loss gain loss
AA186327 SNX14 6q14-q15 sorting nexin 14     (1/14)   (5/8)
AA287917 TNPO1 5q13.2 karyopherin (importin) beta 2 (4/6)    (1/14)   (2/8)
AA442092 CTNNB1 3p21 catenin, beta 1     (1/14)   (1/8)
AA455917 SEC22L1 1q21.2-q21.3 SEC22 vesicle trafficking protein-like 1   (2/6)   (8/14) (2/8) (1/8)
AA458945 RAB30 11q12-q14 RAB30, member RAS oncogene family (5/6)    (10/14)   (4/8)
AA465386 DDX21   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21     (4/14)   (3/8)
AA465687 RBMS1 2q23.2 cervical cancer oncogene 4 (6/6)   (2/14) (7/14) (2/8) (4/8)
AA478436 SMARCD2 17q23-q24 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 (6/6)   (3/14) (6/14) (1/8) (2/8)
AA478585 BTN3A3 6p21.3 butyrophilin, subfamily 3, member A3 (1/6)      (1/8)
AA774608 PPP1R12B 1q32.1 protein phosphatase 1, regulatory (inhibitor) subunit 12B      (1/8)  
AA931882 ESTs      (3/14)   (5/8)  
AA973568 ESTs    (6/6)   (1/14) (9/14) (2/8) (4/8)
AA973681 ESTs    (5/6)    (3/14)   (1/8)
AA991868 ESTs    (6/6)   (2/14) (7/14) (3/8) (1/8)
AA991871 FOXA1 14q12-q13 forkhead box A1 (3/6)   (1/14)   (3/8)  
AI001856 ESTs   BRG1-binding protein ELD/OSA1 (2/6)    (6/14)   (2/8)
AI015542 TTC10 13q12.1 Probe hTg737 (5/6)    (10/14) (2/8) (1/8)
AI201652 ESTs    (5/6)    (7/14) (1/8) (3/8)
AI261862 ESTs    (2/6)    (12/14)   (3/8)
AI289196 MAN1A2 1p13 mannosidase, alpha, class 1A, member 2 (3/6)      
AI291184 OCLN 5q13.1 occludin (5/6)   (2/14) (1/14)   (1/8)
AI300984 ESTs    (1/6)    (2/14)   
AI311303 ESTs       (9/14)   (3/8)
AI335359 C1orf21 1q25 chromosome 1 open reading frame 21      (3/8)  
AI337344 HSRG1 16q23.1 HSV-1 stimulation-related gene 1 (6/6)   (1/14) (8/14) (3/8) (2/8)
AI348521 HBS1L 6q23-q24 HBS1-like     (8/14)   (6/8)
AI392929 PLU-1 1q32.1 putative DNA/chromatin binding motif      (1/8)  
AI401608 ESTs        (2/8)  
AI492063 ESTs     (2/6) (1/14) (3/14) (5/8)  
AI493835 ESTs    (6/6)   (1/14) (4/14) (2/8) (1/8)
AI655101 XPR1 1q25.1 xenotropic and polytropic retrovirus receptor    (1/14) (1/14) (4/8)  
AI972955 TARP 7p15-p14 T cell receptor gamma locus (1/6)    (7/14)   
H99842 EIF5A 17p13-p12 eukaryotic translation initiation factor 5A (2/6)      
  1. The ID indicate GeneBank ID and the symbol and the cytoband information are from their SOURCE http://source.stanford.edu. The incidence is the number oh cases having log2ratio in the range of our criteria ± 0.3. ESTs are expressed sequenced tags, clones of unknown functions. Genes are listed according to order FDR values.