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Table 2 List of distinctive 33 genes among types A, B (1, 2) and B3

From: Genome-wide genetic aberrations of thymoma using cDNA microarray based comparative genomic hybridization

ID

Symbol

Cytoband

Name

type A

type B (1,2)

type B3

    

gain

loss

gain

loss

gain

loss

AA186327

SNX14

6q14-q15

sorting nexin 14

   

(1/14)

 

(5/8)

AA287917

TNPO1

5q13.2

karyopherin (importin) beta 2

(4/6)

  

(1/14)

 

(2/8)

AA442092

CTNNB1

3p21

catenin, beta 1

   

(1/14)

 

(1/8)

AA455917

SEC22L1

1q21.2-q21.3

SEC22 vesicle trafficking protein-like 1

 

(2/6)

 

(8/14)

(2/8)

(1/8)

AA458945

RAB30

11q12-q14

RAB30, member RAS oncogene family

(5/6)

  

(10/14)

 

(4/8)

AA465386

DDX21

 

DEAD (Asp-Glu-Ala-Asp) box polypeptide 21

   

(4/14)

 

(3/8)

AA465687

RBMS1

2q23.2

cervical cancer oncogene 4

(6/6)

 

(2/14)

(7/14)

(2/8)

(4/8)

AA478436

SMARCD2

17q23-q24

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2

(6/6)

 

(3/14)

(6/14)

(1/8)

(2/8)

AA478585

BTN3A3

6p21.3

butyrophilin, subfamily 3, member A3

(1/6)

    

(1/8)

AA774608

PPP1R12B

1q32.1

protein phosphatase 1, regulatory (inhibitor) subunit 12B

    

(1/8)

 

AA931882

ESTs

    

(3/14)

 

(5/8)

 

AA973568

ESTs

  

(6/6)

 

(1/14)

(9/14)

(2/8)

(4/8)

AA973681

ESTs

  

(5/6)

  

(3/14)

 

(1/8)

AA991868

ESTs

  

(6/6)

 

(2/14)

(7/14)

(3/8)

(1/8)

AA991871

FOXA1

14q12-q13

forkhead box A1

(3/6)

 

(1/14)

 

(3/8)

 

AI001856

ESTs

 

BRG1-binding protein ELD/OSA1

(2/6)

  

(6/14)

 

(2/8)

AI015542

TTC10

13q12.1

Probe hTg737

(5/6)

  

(10/14)

(2/8)

(1/8)

AI201652

ESTs

  

(5/6)

  

(7/14)

(1/8)

(3/8)

AI261862

ESTs

  

(2/6)

  

(12/14)

 

(3/8)

AI289196

MAN1A2

1p13

mannosidase, alpha, class 1A, member 2

(3/6)

     

AI291184

OCLN

5q13.1

occludin

(5/6)

 

(2/14)

(1/14)

 

(1/8)

AI300984

ESTs

  

(1/6)

  

(2/14)

  

AI311303

ESTs

     

(9/14)

 

(3/8)

AI335359

C1orf21

1q25

chromosome 1 open reading frame 21

    

(3/8)

 

AI337344

HSRG1

16q23.1

HSV-1 stimulation-related gene 1

(6/6)

 

(1/14)

(8/14)

(3/8)

(2/8)

AI348521

HBS1L

6q23-q24

HBS1-like

   

(8/14)

 

(6/8)

AI392929

PLU-1

1q32.1

putative DNA/chromatin binding motif

    

(1/8)

 

AI401608

ESTs

      

(2/8)

 

AI492063

ESTs

   

(2/6)

(1/14)

(3/14)

(5/8)

 

AI493835

ESTs

  

(6/6)

 

(1/14)

(4/14)

(2/8)

(1/8)

AI655101

XPR1

1q25.1

xenotropic and polytropic retrovirus receptor

  

(1/14)

(1/14)

(4/8)

 

AI972955

TARP

7p15-p14

T cell receptor gamma locus

(1/6)

  

(7/14)

  

H99842

EIF5A

17p13-p12

eukaryotic translation initiation factor 5A

(2/6)

     
  1. The ID indicate GeneBank ID and the symbol and the cytoband information are from their SOURCE http://source.stanford.edu. The incidence is the number oh cases having log2ratio in the range of our criteria ± 0.3. ESTs are expressed sequenced tags, clones of unknown functions. Genes are listed according to order FDR values.
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