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Table 4 Simple sequence repeats (SSRs) statistics*

From: MELOGEN: an EST database for melon functional genomics

Dinucleotide repeat Number of di-pSSR %
AG 205 83.3
AT 23 9.4
AC 18 7.3
Total 246 100
Trinucleotide repeat Number of tri-pSSR %
AAC 41 5.7
AAG 471 66.0
AAT 22 3.1
ACC 18 2.5
ACG 14 2.0
ACT 4 0.6
AGC 25 3.5
AGG 54 7.6
ATC 48 6.6
CCG 17 2.4
Total 714 100
Tetranucleotide repeat Number of tetra-pSSR %
AAAC 8 8.7
AAGG 7 7.6
AATC 4 4.3
AATG 3 3.3
AATT 2 2.2
ATCG 2 2.2
ACTC 1 1.1
AAGC 1 1.1
ACAT 1 1.1
AAAG 47 51.1
AAAT 16 17.3
Total 92 100
  1. *The number of di-, tri- and tetranucleotide repeats identified in the melon database is shown for the complete set of putative SSRs (pSSRs).