Skip to main content

Table 2 Burkholderia cepacia complex strains used in this study, and summary of DNA blot analyses of these strains using ecfB, ecfD, ecfE, sigI, and sigJ DNA probes.

From: Architecture of Burkholderia cepacia complex σ70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability

Strains References ecfB ecfD ecfE sigI sigJ
B. cepacia       
   LMG 1222 [55] + + + + +
   AU0113 [56] + + + + +
   LMG 2161 [55] + + + + +
B. stabilis       
   LMG 14294 [57] + + + + +
   AU0244 [58] + + + + +
B. cenocepacia       
   J2315 [59] + + + + +
   H111 [60] + + + + +
   IST404 [61] + + + + +
   BCC020 this study + + + + +
   LMG 18828 [59] + + + + +
   LMG 18830 [59] + + + + +
   BCC021 this study + + + + +
   LMG 21440 [59] + + + + +
   LMG 18829 [59] + + + + +
B. multivorans       
   LMG 13010 [62] + + - -(+)* +
   LMG 16660 [62] + + - -(+)* +
   LMG 18822 [62] + + - -(+)* +
   C1962 [62] + + - -(+)* +
   LMG 16665 [62] + + - -(+)* +
B. vietnamiensis       
   LMG 10929 [63] + + - -(+)* +
   ATCC 53617 [63] + + - -(+)* +
   CL [64] + + - -(+)* +
   LMG 16232 [63] + + - -(+)* +
   LMG 16228 [63] + + - -(+)* +
   LMG 17830 [63] + + - -(+)* +
   LMG 10823 [63] + + - -(+)* +
B. dolosa       
   LMG 18941 [65] + + + -(+)* +
B. pyrrocinia       
   LMG 14191 [66] + + + + +
  1. 32P-random labelling of DNA probes were done as described in the Methods section. See Table 3 for position of the PCR products used for the synthesis of DNA probes. + : positive hybridization signal, - : no hybridization signal (<72% identity). * : hydridization signals varied according to the sigI DNA probe used. (+): these positive signals were only obtained with the Bvi-sigI probe.