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Table 2 Burkholderia cepacia complex strains used in this study, and summary of DNA blot analyses of these strains using ecfB, ecfD, ecfE, sigI, and sigJ DNA probes.

From: Architecture of Burkholderia cepacia complex σ70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability

Strains

References

ecfB

ecfD

ecfE

sigI

sigJ

B. cepacia

      

   LMG 1222

[55]

+

+

+

+

+

   AU0113

[56]

+

+

+

+

+

   LMG 2161

[55]

+

+

+

+

+

B. stabilis

      

   LMG 14294

[57]

+

+

+

+

+

   AU0244

[58]

+

+

+

+

+

B. cenocepacia

      

   J2315

[59]

+

+

+

+

+

   H111

[60]

+

+

+

+

+

   IST404

[61]

+

+

+

+

+

   BCC020

this study

+

+

+

+

+

   LMG 18828

[59]

+

+

+

+

+

   LMG 18830

[59]

+

+

+

+

+

   BCC021

this study

+

+

+

+

+

   LMG 21440

[59]

+

+

+

+

+

   LMG 18829

[59]

+

+

+

+

+

B. multivorans

      

   LMG 13010

[62]

+

+

-

-(+)*

+

   LMG 16660

[62]

+

+

-

-(+)*

+

   LMG 18822

[62]

+

+

-

-(+)*

+

   C1962

[62]

+

+

-

-(+)*

+

   LMG 16665

[62]

+

+

-

-(+)*

+

B. vietnamiensis

      

   LMG 10929

[63]

+

+

-

-(+)*

+

   ATCC 53617

[63]

+

+

-

-(+)*

+

   CL

[64]

+

+

-

-(+)*

+

   LMG 16232

[63]

+

+

-

-(+)*

+

   LMG 16228

[63]

+

+

-

-(+)*

+

   LMG 17830

[63]

+

+

-

-(+)*

+

   LMG 10823

[63]

+

+

-

-(+)*

+

B. dolosa

      

   LMG 18941

[65]

+

+

+

-(+)*

+

B. pyrrocinia

      

   LMG 14191

[66]

+

+

+

+

+

  1. 32P-random labelling of DNA probes were done as described in the Methods section. See Table 3 for position of the PCR products used for the synthesis of DNA probes. + : positive hybridization signal, - : no hybridization signal (<72% identity). * : hydridization signals varied according to the sigI DNA probe used. (+): these positive signals were only obtained with the Bvi-sigI probe.