Table 2 The most abundant transcripts in adult Dictyocaulus viviparus
From: A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus
No | Cluster ID | Percentage | No of ESTs | Gene ID | E-value | % identity | Description from NR hit | C. elegans Homologue | Top hit in C. elegans | C. elegans RNAi | C. elegans gene ontology |
|---|---|---|---|---|---|---|---|---|---|---|---|
1 | DvContig 413 | 100 | 261 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
2 | DvContig 438 | 94.64 | 247 | CAF29502.1 | 6E-64 | 118/126 (93%) | major sperm protein [Oesophagostomum dentatum] | msp-76 – (Major Sperm Protein) | ZK1251.6 | fat content increased | embryonic development; structural molecule activity |
3 | DvContig 329 | 31.03 | 81 | ABA53863.1 | 2E-136 | 220/333 (66%) | cathepsin B-like cysteine protease 1 [Parelaphostrongylus tenuis] | cysteine protease | F57F5.1 | embryonic lethal (Let) locomotion abnormal (unc) larval arrest (Lva) | cathepsin B activity |
4 | DvContig 371 | 27.20 | 71 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
5 | DvContig 366 | 25.67 | 67 | CAF29502.1 | 4E-65 | 118/126 (93%) | major sperm protein [Oesophagostomum dentatum] | msp-76 – (Major Sperm Protein) | ZK1251.6 | fat content increased | embryonic development; structural molecule activity |
6 | DvContig 318 | 18.39 | 48 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
7 | DvContig 238 | 16.48 | 43 | AAO63577.1 | 3E-15 | 59/199 (29%) | secreted protein 5 precursor [Ancylostoma caninum] | vap-1 – (Venom-Allergen-like Protein) | F11C7.3b | No observed phenotype is found. | extracellular region |
8 | DvContig 419 | 13.03 | 34 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
9 | DvContig 415 | 12.26 | 32 | NP_500698.1 | 3E-26 | 142/237 (59%) | Sperm-Specific family, class Q family member (ssq-2) [Caenorhabditis elegans] | ssq-2 – (Sperm-Specific family, class Q) | T28H11.5 | locomotion abnormal (unc) | locomotory behavior; GPCR protein signaling pathway; integral to membrane; leukotriene receptor activity; structural molecule activity |
10 | DvContig 140 | 11.88 | 31 | NP_579952.2 | 7E-29 | 69/86 (80%) | cytochrome oxidase subunit I [Ancylostoma duodenale] | cytochrome oxidase subunit I | MTCE.26 | No observed phenotype is found. | electron transport; membrane; cytochrome C-oxidase activity |
11 | DvContig 385 | 11.88 | 31 | NP_500520.1 | 3E-62 | 230/300 (76%) | COLlagen family member (col-3) [Caenorhabditis elegans] | col-34 cuticular collagen | F36A4.10 | organism morphology abnormal (Bmd), dumpy (Dpy), locomotion abnormal (unc) | locomotory behavior; GPCR protein signaling pathway; integral to membrane; leukotriene receptor activity; structural molecule activity |
12 | DvContig 357 | 9.96 | 26 | NP_500697.1 | 2E-26 | 70/110 (63%) | Sperm-Specific family, class P family member (ssp-19) [Caenorhabditis. elegans] | ssp-11 – (Sperm-Specific family, class P) | T28H11.6 | No observed phenotype is found. | structural molecule activity |
13 | DvContig 347 | 9.20 | 24 | AAO63577.1 | 2.00E-15 | 59/199 (29%) | secreted protein 5 precursor [Ancylostoma caninum] | vap-1 – (Venom-Allergen-like Protein) | F11C7.3b | No observed phenotype is found. | extracellular region |
14 | DvContig 253 | 8.81 | 23 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
15 | DvContig 261 | 7.66 | 20 | AAO63577.1 | 6E-16 | 67/198 (33%) | secreted protein 5 precursor [Ancylostoma caninum] | testes-specific protein like | T05A10.5 | No observed phenotype is found. | extracellular region |
16 | DvContig 352 | 7.66 | 20 | NP_506519.1 | 1E-27 | 82/268 (30%) | Hypothetical protein CBG09313 [Caenorhabditis briggsae] Domain DUF856 | T16A9.5 gene (Unnamed protein) | T16A9.5 | No observed phenotype is found. | dicarboxylic acid transport |
17 | DvContig 390 | 7.66 | 20 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
18 | DvContig 258 | 7.28 | 19 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
19 | DvContig 403 | 7.28 | 19 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
20 | DvContig 178 | 6.90 | 18 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
21 | DvContig 86 | 5.75 | 15 | AAO63577.1 | 1E-16 | 64/215 (29%) | secreted protein 5 precursor [Ancylostoma caninum] | testes-specific protein like | T05A10.5 | No observed phenotype is found. | extracellular region |
22 | DvContig 346 | 5.75 | 15 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
23 | DvContig 348 | 5.36 | 14 | AAP41952.1 | 3E-12 | 55/203 (27%) | secreted protein ASP-2 [Necator americanus] | vap-1 – (Venom-Allergen-like Protein) | F11C7.3b | No observed phenotype is found. | None |
24 | DvContig 224 | 4.98 | 13 | BAA12092.1 | 5E-168 | 310/366 (84%) | aldolase Ce2 [Caenorhabditis elegans] | Fructose-biphosphate aldolase | F01F1.12a | embryonic lethal (Let), sterile progeny (Stp), egg laying abnormal (Egl), sick (Sck), locomotion abnormal (unc), (Emb) slow growth (Gro) | None |
25 | DvContig 354 | 4.98 | 13 | NP_510410.1 | 1E-16 | 49/77 (63%) | HIStone family member (his-24) [Caenorhabditis elegans] | his-24 histone H1 | M163.3 | No observed phenotype is found. | nucleosome assembly; DNA binding; nucleus |
26 | DvContig 216 | 4.60 | 12 | CAE67138.1 | 7E-141 | 233/309 (75%) | casein kinase [Caenorhabditis briggsae] | casein kinase | C39H7.1 | No observed phenotype is found. | protein amino acid phosphorylation; ATP binding; protein kinase activity; protein serine/threonine kinase activity; protein-tyrosine kinase activity |
27 | DvContig 161 | 4.21 | 11 | AAO63577.1 | 3E-15 | 64/215 (29%) | secreted protein 5 precursor [Ancylostoma caninum] | vap-1 – (Venom-Allergen-like Protein) | F11C7.3b | No observed phenotype is found. | extracellular region |
28 | DvContig 202 | 4.21 | 11 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
29 | DvContig 266 | 4.21 | 11 | - | - | - | No significant similarity (novel) | No significant similarity (novel) | None | None | None |
30 | DvContig 356 | 4.21 | 11 | NP_492448.1 | 3E-31 | 76/191 (39%) | C-type Lectin [Caenorhabditis elegans] | clec-87 – (C-type LECtin) | C25A1.8 | No observed phenotype is found. | sugar binding activity |
31 | DvContig 154 | 3.83 | 10 | NP_492457.1 | 0 | 785/852 (92%) | Elongation Factor family member (eft-2) [Caenorhabditis elegans] | eft-2 – (Elongation FacTor) | F25H5.4 | embryonic lethal (Let), larval arrest (Lva, maternal sterile (Ste), protruding vulva (Pvl) | embryonic development; translational elongation; translational termination |