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Table 1 Genes included in the phylogenetic analyses of teleost model species and the number of positions. We used only genes for which an ortholog in Xenopus tropicalis and H. sapiens was available, as well as the full sequences set for all teleost fishes for one paralog. Regions that could not be aligned were excluded from the analyses.

From: Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni

Cluster Fish paralog Positions included in analysis
HoxA evx1 675
  a13a 791
  a11a 737
  a9a 639
  a5a 768
  a4a 624
  a3a 1106
HoxB b1b 625
HoxC c13a 921
  c12a 780
  c11a 915
  c10a 885
  c9a 783
  c8a 729
  c6a 630
  c5a 642
  c4a 762
HoxD evx2 1236
  d12a 774
  d11a 700
  d10a 975
  d9a 633
  d4a 624
  d3a 1167
total 24 genes 20,009