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Table 1 Genome data

From: Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina

Phylum Subphylum Name Abbreviation Count of ORFs Source WWW Funcat InterPro Protfun
Ascomycota Archeascomycota Schizosaccharomyces pombe Spom 4984 Sanger Institute, UK http://www.sanger.ac.uk/Projects/S_pombe/ YES   
Ascomycota Pezizomycotina Aspergillus fumigatus Afum 9926 Tigr, USA http://www.tigr.org/tdb/e2k1/afu1/   YES  
Ascomycota Pezizomycotina Aspergillus nidulans Anid 9541 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/   YES YES
Ascomycota Pezizomycotina Aspergillus niger Anig 11200 Joint Genome Institute, USA http://genome.jgi-psf.org/    
Ascomycota Pezizomycotina Aspergillus oryzae Aory 12062 NITE, Japan http://www.bio.nite.go.jp/dogan/Top   YES  
Ascomycota Pezizomycotina Botrytis cinerea Bcin 16446 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/    
Ascomycota Pezizomycotina Chaetomium globosum Cglo 11124 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/   YES  
Ascomycota Pezizomycotina Coccidioides immitis Cimm 10457 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/    
Ascomycota Pezizomycotina Fusarium graminearum Fgra 11640 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/ YES YES YES
Ascomycota Pezizomycotina Magnaporthe grisea Mgri 11109 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/   YES YES
Ascomycota Pezizomycotina Nectria haematococca Nhae 16237 Joint Genome Institute, USA http://genome.jgi-psf.org/    
Ascomycota Pezizomycotina Neurospora crassa Ncra 10082 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/   YES YES
Ascomycota Pezizomycotina Sclerotinia sclerotiorum Sscl 14522 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/    
Ascomycota Pezizomycotina Stagonospora nodorum Snod 16597 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/    
Ascomycota Pezizomycotina Trichoderma reesei Tree 9997 Joint Genome Institute, USA http://genome.jgi-psf.org/   YES YES
Ascomycota Saccharomycotina Ashbya gossypii Agos 4726 Ashbya Genome Database, Switzerland http://agd.unibas.ch/   YES  
Ascomycota Saccharomycotina Candida albicans Calb 6165 Stanford University, UK http://www-sequence.stanford.edu/group/candida/ YES YES  
Ascomycota Saccharomycotina Candida glabrata Cgla 5181 Genolevures Consortium, France http://cbi.labri.fr/Genolevures/   YES  
Ascomycota Saccharomycotina Candida guilliermondii Cgui 5920 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/    
Ascomycota Saccharomycotina Candida lusitaniae Clus 5941 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/    
Ascomycota Saccharomycotina Debaryomyces hansenii Dhan 6318 Genolevures Consortium, France http://cbi.labri.fr/Genolevures/   YES  
Ascomycota Saccharomycotina Kluyveromyces lactis Klac 5327 Genolevures Consortium, France http://cbi.labri.fr/Genolevures/   YES  
Ascomycota Saccharomycotina Pichia pastoris Ppas 5999 Integrated genomics, USA http://ergo.integratedgenomics.com/ERGO/    
Ascomycota Saccharomycotina Pichia stipitis Psti 5839 Joint Genome Institute, USA http://genome.jgi-psf.org/    
Ascomycota Saccharomycotina Saccharomyces castellii Scas 4677 Saccharomyces Genome Database, USA http://www.yeastgenome.org/    
Ascomycota Saccharomycotina Saccharomyces cerevisiae Scer 5888 Saccharomyces Genome Database, USA http://www.yeastgenome.org/ YES YES YES
Ascomycota Saccharomycotina Saccharomyces kluyveri Sklu 2968 Saccharomyces Genome Database, USA http://www.yeastgenome.org/    
Ascomycota Saccharomycotina Yarrowia lipolytica Ylip 6521 Genolevures Consortium, France http://cbi.labri.fr/Genolevures/   YES YES
Basidiomycota Hymenomycetes Coprinus cinereus Ccin 13544 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/    
Basidiomycota Hymenomycetes Cryptococcus neoformans Cneo 7302 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/    
Basidiomycota Hymenomycetes Phanerochaete chrysosporium Pchr 10048 Joint Genome Institute, USA http://genome.jgi-psf.org/   YES YES
Basidiomycota Ustilaginomycetes Ustilago maydis Umay 6522 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/ YES   
Zygomycota Zygomycetes Rhizopus oryzae Rory 17467 Broad Institute, USA http://www.broad.mit.edu/annotation/fungi/fgi/    
  1. Phylum, subphylum, abbreviation used in figures, count of ORFs in the genome, data source and internet address and information, whether Funcat annotation existed and whether InterPro or Protfun analysis was carried out, shown for each species.
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BMC Genomics

ISSN: 1471-2164

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