Table 4 Enriched cluster categories in region C: " Saccharomycotina absent"
From: Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina
Software or database | Database identifier | Category | Count of clusters in region | % of clusters in region | % of all clusters with category | P-value | Author assignment | Figure 9 |
|---|---|---|---|---|---|---|---|---|
ProtFun | - | TMHMM: No transmembrane | 825 | 82.0 | 19 | 8.60E-04 | - | - |
ProtFun | - | Enzyme/nonenzyme: Enzyme | 747 | 74.0 | 19 | 4.50E-02 | - | - |
ProtFun | - | Cellular role: Uncategorised | 722 | 72.0 | 20 | 2.20E-06 | - | - |
ProtFun | - | TargetP: Mitochondrion | 81 | 8.0 | 22 | 4.80E-02 | - | - |
ProtFun | - | Cellular role: Replication and transcription | 9 | 1.0 | 38 | 2.10E-02 | - | - |
Funcat | 01.01.11.04.02 | Degradation of leucine | 5 | 1.0 | 63 | 1.30E-02 | 2ary metabolism | - |
Funcat | 01.01.11.04 | metabolism of leucine | 5 | 1.0 | 50 | 3.90E-02 | 2ary metabolism | - |
Interpro | IPR001623 | Heat shock protein DnaJ, N-terminal | 9 | 0.9 | 43 | 7.90E-03 | Macromolecule interaction | NO |
Interpro | IPR000195 | RabGAP/TBC | 6 | 0.6 | 55 | 7.30E-03 | Secretion | NO |
Interpro | IPR000683 | Oxidoreductase, N-terminal | 6 | 0.6 | 55 | 7.30E-03 | Metabolism | NO |
Interpro | IPR006091 | Acyl-CoA dehydrogenase, central region | 4 | 0.4 | 100 | 1.10E-03 | Metabolism | NO |
Interpro | IPR006092 | Acyl-CoA dehydrogenase, N-terminal | 4 | 0.4 | 100 | 1.10E-03 | Metabolism | NO |
Funcat | 01.01.11.02.02 | Degradation of isoleucine | 4 | 0.0 | 67 | 2.00E-02 | 2ary metabolism | - |
Funcat | 01.01.11.03.02 | Degradation of valine | 4 | 0.0 | 57 | 3.90E-02 | 2ary metabolism | - |
Funcat | 01.01.03.01.02 | Degradation of glutamine | 2 | 0.0 | 100 | 4.40E-02 | 2ary metabolism | - |