Table 5 Enriched cluster categories in region C: "Saccharomycotina unique"
From: Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina
Software or database | Database identifier | Category | Count of clusters in region | % of clusters in region | % of all clusters with category | P-value | Author assignment | Figure 9 |
|---|---|---|---|---|---|---|---|---|
ProtFun | - | TMHMM: No transmembrane | 380 | 82.0 | 9 | 2.90E-02 | - | - |
ProtFun | - | TargetP: No splice site | 306 | 66.0 | 10 | 1.30E-04 | - | - |
Funcat | 11 | Transcription | 105 | 23.0 | 11 | 2.60E-02 | Transcription | - |
ProtFun | - | Enzyme/nonenzyme: Nonenzyme | 95 | 20.0 | 13 | 7.80E-07 | - | - |
ProtFun | - | Cellular role: Translation | 87 | 19.0 | 23 | 6.20E-20 | - | - |
Funcat | 11.02 | RNA synthesis | 70 | 15.0 | 12 | 4.70E-02 | Transcription | - |
ProtFun | - | Enzyme class: Ligase (EC 6.-.-.-) | 68 | 15.0 | 15 | 2.40E-06 | - | - |
ProtFun | - | TargetP: Mitochondrion | 54 | 12.0 | 14 | 4.20E-05 | - | - |
ProtFun | - | Cellular role: Central intermediary metabolism | 43 | 9.0 | 13 | 2.00E-03 | - | - |
ProtFun | - | Cellular role: Amino acid biosynthesis | 37 | 8.0 | 35 | 6.80E-15 | - | - |
Funcat | 42.16 | Biogenesis of cellular compartment: mitochondrion | 34 | 7.0 | 21 | 5.30E-06 | Mitochondrion | - |
Funcat | 12.01.01 | Ribosomal proteins | 27 | 6.0 | 14 | 3.80E-02 | Protein translation | - |
ProtFun | - | Cellular role: Energy metabolism | 20 | 4.0 | 17 | 1.80E-03 | - | - |
Funcat | 70.16 | Subcellular localisation: mitochondrion | 18 | 4.0 | 16 | 2.40E-02 | Mitochondrion | - |
Funcat | 11.04.01 | rRNA processing | 17 | 4.0 | 15 | 3.90E-02 | Transcription | - |
ProtFun | - | Cellular role: Regulatory functions | 15 | 3.0 | 16 | 1.10E-02 | - | - |
Interpro | IPR011046 | WD40-like | 14 | 3.0 | 18 | 5.70E-03 | Dubious | YES |
ProtFun | - | Enzyme class: Isomerase (EC 5. -. -.-) | 14 | 3.0 | 45 | 5.30E-08 | - | - |
Funcat | 11.02.01 | rRNA synthesis | 11 | 2.0 | 19 | 2.40E-02 | Transcription | - |
ProtFun | - | Cellular role: Biosynthesis of cofactors | 7 | 2.0 | 37 | 6.00E-04 | - | - |
ProtFun | - | Cellular role: Replication and transcription | 7 | 2.0 | 29 | 2.80E-03 | - | - |
Funcat | 18.02.09 | Regulator of transcription factor | 5 | 1.0 | 31 | 1.50E-02 | Transcription regulation | - |
Interpro | IPR006596 | Nucleotide binding protein, PINc | 3 | 0.6 | 60 | 5.20E-03 | Nucleotide binding | NO |
Interpro | IPR000992 | Stress-induced protein SRP1/TIP1 | 2 | 0.4 | 100 | 7.10E-03 | Stress response | NO |
Interpro | IPR007757 | MT-A70 | 2 | 0.4 | 100 | 7.10E-03 | Nucleotide binding | NO |