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Table 5 Enriched cluster categories in region C: "Saccharomycotina unique"

From: Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina

Software or database Database identifier Category Count of clusters in region % of clusters in region % of all clusters with category P-value Author assignment Figure 9
ProtFun - TMHMM: No transmembrane 380 82.0 9 2.90E-02 - -
ProtFun - TargetP: No splice site 306 66.0 10 1.30E-04 - -
Funcat 11 Transcription 105 23.0 11 2.60E-02 Transcription -
ProtFun - Enzyme/nonenzyme: Nonenzyme 95 20.0 13 7.80E-07 - -
ProtFun - Cellular role: Translation 87 19.0 23 6.20E-20 - -
Funcat 11.02 RNA synthesis 70 15.0 12 4.70E-02 Transcription -
ProtFun - Enzyme class: Ligase (EC 6.-.-.-) 68 15.0 15 2.40E-06 - -
ProtFun - TargetP: Mitochondrion 54 12.0 14 4.20E-05 - -
ProtFun - Cellular role: Central intermediary metabolism 43 9.0 13 2.00E-03 - -
ProtFun - Cellular role: Amino acid biosynthesis 37 8.0 35 6.80E-15 - -
Funcat 42.16 Biogenesis of cellular compartment: mitochondrion 34 7.0 21 5.30E-06 Mitochondrion -
Funcat 12.01.01 Ribosomal proteins 27 6.0 14 3.80E-02 Protein translation -
ProtFun - Cellular role: Energy metabolism 20 4.0 17 1.80E-03 - -
Funcat 70.16 Subcellular localisation: mitochondrion 18 4.0 16 2.40E-02 Mitochondrion -
Funcat 11.04.01 rRNA processing 17 4.0 15 3.90E-02 Transcription -
ProtFun - Cellular role: Regulatory functions 15 3.0 16 1.10E-02 - -
Interpro IPR011046 WD40-like 14 3.0 18 5.70E-03 Dubious YES
ProtFun - Enzyme class: Isomerase (EC 5. -. -.-) 14 3.0 45 5.30E-08 - -
Funcat 11.02.01 rRNA synthesis 11 2.0 19 2.40E-02 Transcription -
ProtFun - Cellular role: Biosynthesis of cofactors 7 2.0 37 6.00E-04 - -
ProtFun - Cellular role: Replication and transcription 7 2.0 29 2.80E-03 - -
Funcat 18.02.09 Regulator of transcription factor 5 1.0 31 1.50E-02 Transcription regulation -
Interpro IPR006596 Nucleotide binding protein, PINc 3 0.6 60 5.20E-03 Nucleotide binding NO
Interpro IPR000992 Stress-induced protein SRP1/TIP1 2 0.4 100 7.10E-03 Stress response NO
Interpro IPR007757 MT-A70 2 0.4 100 7.10E-03 Nucleotide binding NO
  1. See Table 2 for legend