The cys-loop ligand-gated ion channel gene superfamily of the red flour beetle, Tribolium castaneum

BMC Genomics

Table 2 Percentage identity/similarity between T. castaneum and D. melanogaster non-nAChR subunit protein sequences. Proposed orthologs are shown in bold.

Subunit	Tcas_RDL	Tcas_GRD	Tcas_LCCH3	Tcas_GluCl	Tcas_HisCl1	Tcas_HisCl2	Tcas_pHCl	Tcas_8916	Tcas_12344	CLGC1	CLGC2	CLGC3
Linkage Group	chrUn_22	4	4	chrUn_11	4	1	2	4	1	8	8	8
RDL	69/73	24/37	27/43	22/34	19/32	20/33	17/31	21/35	19/31	17/31	16/30	15/30
GRD	25/38	54/62	24/38	21/34	18/33	18/32	15/26	34/48	17/30	17/29	17/30	14/30
LCCH3	31/48	27/43	73/82	25/42	23/40	25/39	17/34	24/38	20/36	18/36	17/36	17/34
GluCl	27/41	22/39	26/42	83/89	27/42	27/45	24/44	22/38	21/39	19/36	19/35	19/37
HisCl1	21/38	20/38	25/41	26/42	64/70	43/57	19/37	19/34	22/42	18/35	18/34	16/35
HisCl2	24/41	21/37	25/40	26/43	50/64	79/85	21/39	20/35	26/46	19/37	18/37	18/35
pHCl	18/33	15/28	17/32	23/40	19/36	19/36	68/74	15/27	17/34	21/36	18/31	19/35
CG8916	22/37	32/47	23/38	19/34	19/30	19/33	15/28	54/66	17/29	15/30	15/30	15/28
CG12344	22/39	21/35	20/36	21/39	25/44	25/45	19/36	16/30	54/71	18/33	17/32	18/35
CG6927	19/35	17/31	18/37	18/34	17/33	17/36	19/33	15/30	16/32	38/54	36/51	30/48
CG7589	18/35	16/31	20/39	19/36	17/34	18/35	18/31	16/34	18/34	37/56	36/52	32/51
CG11340	19/34	15/29	17/36	20/35	17/35	18/35	19/34	16/32	17/32	32/50	34/50	27/45
Ntr	8/21	9/23	10/23	9/25	10/24	11/25	11/26	8/20	8/23	8/23	8/21	9/28

ISSN: 1471-2164