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Table 1 Partial probe and synthetic target sequences

From: Quantitative measurement of pathogen specific human memory T cell repertoire diversity using a CDR3β-specific microarray

IRSS Probe* Synthetic Target** IRSS Probe* Synthetic Target**
1 -GTAGTATTAGGAGCTCC-3' -GGAGCTCCTAAT- 55 -GTAGTATCCGCTCCTCC-3' -GGAGGAGCGGAT-
2 -GTAGTATAAGGAGCTCC-3' -GGAGCTCCTTAT- 56 -GTAGTATTCGATCCTCC-3' -GGAGGATCGAAT-
3 -GTAGTATAAGAAGCTCC-3' -GGAGCTTCTTAT- 57 -GTAGTATCCGATCCTCC-3' -GGAGGATCGGAT-
4 -GTAGTATCAGGAGCTCC-3' -GGAGCTCCTGAT- 58 -GTAGTATTCGGTCCTCC-3' -GGAGGACCGAAT-
5 -GTAGTATTAGAAGCTCC-3' -GGAGCTTCTAAT- 59 -GTAGTATCCGGTCCTCC-3' -GGAGGACCGGAT-
6 -GTAGTATTCGTAGCTCC-3' -GGAGCTACGAAT- 60 -GTAGTATTAGGAGTTCC-3' -GGAACTCCTAAT-
7 -GTAGTATCCGCAGCTCC-3' -GGAGCTGCGGAT- 61 -GTAGTATCAGGAGTTCC-3' -GGAACTCCTGAT-
8 -GTAGTATAAGGTCCTCC-3' -GGAGGACCTTAT- 62 -GTAGTATTAGAAGTTCC-3' -GGAACTTCTAAT-
9 -GTAGTATAAGATCCTCC-3' -GGAGGATCTTAT- 63 -GTAGTATCAGAAGTTCC-3' -GGAACTTCTGAT-
10 -GTAGTATACGTAGCTCC-3' -GGAGCTACGTAT- 64 -GTAGTATTAGGTCTTCC-3' -GGAAGACCTAAT-
11 -GTAGTATACGCAGCTCC-3' -GGAGCTGCGTAT- 65 -GTAGTATCAGGTCTTCC-3' -GGAAGACCTGAT-
12 -GTAGTATACGAAGCTCC-3' -GGAGCTTCGTAT- 66 -GTAGTATTAGATCTTCC-3' -GGAAGATCTAAT-
13 -GTAGTATACGGAGCTCC-3' -GGAGCTCCGTAT- 67 -GTAGTATCAGATCTTCC-3' -GGAAGATCTGAT-
14 -GTAGTATACGTTCCTCC-3' -GGAGGAACGTAT- 68 -GTAGTATTCGTAGTTCC-3' -GGAACTACGAAT-
15 -GTAGTATACGCTCCTCC-3' -GGAGGAGCGTAT- 69 -GTAGTATCCGTAGTTCC-3' -GGAACTACGGAT-
16 -GTAGTATACGATCCTCC-3' -GGAGGATCGTAT- 70 -GTAGTATTCGCAGTTCC-3' -GGAACTGCGAAT-
17 -GTAGTATACGGTCCTCC-3' -GGAGGACCGTAT- 71 -GTAGTATCCGCAGTTCC-3' -GGAACTGCGGAT-
18 -GTAGTATAAGGAGTTCC-3' -GGAACTCCTTAT- 72 -GTAGTATTCGAAGTTCC-3' -GGAACTTCGAAT-
19 -GTAGTATAAGAAGTTCC-3' -GGAACTTCTTAT- 73 -GTAGTATCCGAAGTTCC-3' -GGAACTTCGGAT-
20 -GTAGTATAAGGTCTTCC-3' -GGAAGACCTTAT- 74 -GTAGTATTCGGAGTTCC-3' -GGAACTCCGAAT-
21 -GTAGTATAAGGTCATCC-3' -GGATGACCTTAT- 75 -GTAGTATCCGGAGTTCC-3' -GGAACTCCGGAT-
22 -GTAGTATAAGGTCGTCC-3' -GGACGACCTTAT- 76 -GTAGTATTCGTTCTTCC-3' -GGAAGAACGAAT-
23 -GTAGTATAAGATCTTCC-3' -GGAAGATCTTAT- 77 -GTAGTATCCGTTCTTCC-3' -GGAAGAACGGAT-
24 -GTAGTATAAGATCATCC-3' -GGATGATCTTAT- 78 -GTAGTATTCGCTCTTCC-3' -GGAAGAGCGAAT-
25 -GTAGTATAAGATCGTCC-3' -GGACGATCTTAT- 79 -GTAGTATCCGCTCTTCC-3' -GGAAGAGCGGAT-
26 -GTAGTATACGTAGTTCC-3' -GGAACTACGTAT- 80 -GTAGTATTCGATCTTCC-3' -GGAAGATCGAAT-
27 -GTAGTATACGCAGTTCC-3' -GGAACTGCGTAT- 81 -GTAGTATCCGATCTTCC-3' -GGAAGATCGGAT-
28 -GTAGTATACGAAGTTCC-3' -GGAACTTCGTAT- 82 -GTAGTATTCGGTCTTCC-3' -GGAAGACCGAAT-
29 -GTAGTATACGGAGTTCC-3' -GGAACTCCGTAT- 83 -GTAGTATCCGGTCTTCC-3' -GGAAGACCGGAT-
30 -GTAGTATACGTTCATCC-3' -GGATGAACGTAT- 84 -GTAGTATTAGGTCATCC-3' -GGATGACCTAAT-
31 -GTAGTATACGTTCGTCC-3' -GGACGAACGTAT- 85 -GTAGTATCAGGTCATCC-3' -GGATGACCTGAT-
32 -GTAGTATACGTTCTTCC-3' -GGAAGAACGTAT- 86 -GTAGTATTAGATCATCC-3' -GGATGATCTAAT-
33 -GTAGTATACGCTCATCC-3' -GGATGAGCGTAT- 87 -GTAGTATCAGATCATCC-3' -GGATGATCTGAT-
34 -GTAGTATACGCTCGTCC-3' -GGACGAGCGTAT- 88 -GTAGTATTCGTTCATCC-3' -GGATGAACGAAT-
35 -GTAGTATACGATCTTCC-3' -GGAAGATCGTAT- 89 -GTAGTATCCGTTCATCC-3' -GGATGAACGGAT-
36 -GTAGTATACGATCATCC-3' -GGATGATCGTAT- 90 -GTAGTATTCGCTCATCC-3' -GGATGAGCGAAT-
37 -GTAGTATACGATCGTCC-3' -GGACGATCGTAT- 91 -GTAGTATCCGCTCATCC-3' -GGATGAGCGGAT-
38 -GTAGTATACGGTCTTCC-3' -GGAAGACCGTAT- 92 -GTAGTATTCGATCATCC-3' -GGATGATCGAAT-
39 -GTAGTATACGGTCATCC-3' -GGATGACCGTAT- 93 -GTAGTATCCGATCATCC-3' -GGATGATCGGAT-
40 -GTAGTATACGGTCGTCC-3' -GGACGACCGTAT- 94 -GTAGTATTCGGTCATCC-3' -GGATGACCGAAT-
41 -GTAGTATCAGAAGCTCC-3' -GGAGCTTCTGAT- 95 -GTAGTATCCGGTCATCC-3' -GGATGACCGGAT-
42 -GTAGTATTAGGTCCTCC-3' -GGAGGACCTAAT- 96 -GTAGTATTAGGTCGTCC-3' -GGACGACCTAAT-
43 -GTAGTATCAGGTCCTCC-3' -GGAGGACCTGAT- 97 -GTAGTATCAGGTCGTCC-3' -GGACGACCTGAT-
44 -GTAGTATTAGATCCTCC-3' -GGAGGATCTAAT- 98 -GTAGTATTAGATCGTCC-3' -GGACGATCTAAT-
45 -GTAGTATCAGATCCTCC-3' -GGAGGATCTGAT- 99 -GTAGTATCAGATCGTCC-3' -GGACGATCTGAT-
46 -GTAGTATCCGTAGCTCC-3' -GGAGCTACGGAT- 100 -GTAGTATTCGTTCGTCC-3' -GGACGAACGAAT-
47 -GTAGTATTCGCAGCTCC-3' -GGAGCTGCGAAT- 101 -GTAGTATCCGTTCGTCC-3' -GGACGAACGGAT-
48 -GTAGTATTCGAAGCTCC-3' -GGAGCTTCGAAT- 102 -GTAGTATTCGCTCGTCC-3' -GGACGAGCGAAT-
49 -GTAGTATCCGAAGCTCC-3' -GGAGCTTCGGAT- 103 -GTAGTATCCGCTCGTCC-3' -GGACGAGCGGAT-
50 -GTAGTATTCGGAGCTCC-3' -GGAGCTCCGAAT- 104 -GTAGTATTCGATCGTCC-3' -GGACGATCGAAT-
51 -GTAGTATCCGGAGCTCC-3' -GGAGCTCCGGAT- 105 -GTAGTATCCGATCGTCC-3' -GGACGATCGGAT-
52 -GTAGTATTCGTTCCTCC-3' -GGAGGAACGAAT- 106 -GTAGTATTCGGTCGTCC-3' -GGACGACCGAAT-
53 -GTAGTATCCGTTCCTCC-3' -GGAGGAACGGAT- 107 -GTAGTATCCGGTCGTCC-3' -GGACGACCGGAT-
54 -GTAGTATTCGCTCCTCC-3' -GGAGGAGCGAAT- 108 -GTAGTATACGCTCTTCC-3' -GGAAGAGCGTAT-
  1. * Entire probe sequence: 5'-GAA GAG TAT GGT TTC GTA TAC GTA AAA AAA AAA AAA AAA AAA AAA AXX XXX XXX XXX XXX XXX-3' (X represents tabulated probe sequence for clonotypes 1–108)
  2. **Entire synthetic target sequence: Cy3–5'-CGG CCC GAA GTA CTG CTC GTA XXX XXX XXX XXX ACT ACT GGC ACA GAG ATA GAA AGC TGT CGG GTT CTT TTG G-3' (X represents tabulated synthetic target sequence for clonotypes 1–108)