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Table 1 Partial probe and synthetic target sequences

From: Quantitative measurement of pathogen specific human memory T cell repertoire diversity using a CDR3β-specific microarray

IRSS

Probe*

Synthetic Target**

IRSS

Probe*

Synthetic Target**

1

-GTAGTATTAGGAGCTCC-3'

-GGAGCTCCTAAT-

55

-GTAGTATCCGCTCCTCC-3'

-GGAGGAGCGGAT-

2

-GTAGTATAAGGAGCTCC-3'

-GGAGCTCCTTAT-

56

-GTAGTATTCGATCCTCC-3'

-GGAGGATCGAAT-

3

-GTAGTATAAGAAGCTCC-3'

-GGAGCTTCTTAT-

57

-GTAGTATCCGATCCTCC-3'

-GGAGGATCGGAT-

4

-GTAGTATCAGGAGCTCC-3'

-GGAGCTCCTGAT-

58

-GTAGTATTCGGTCCTCC-3'

-GGAGGACCGAAT-

5

-GTAGTATTAGAAGCTCC-3'

-GGAGCTTCTAAT-

59

-GTAGTATCCGGTCCTCC-3'

-GGAGGACCGGAT-

6

-GTAGTATTCGTAGCTCC-3'

-GGAGCTACGAAT-

60

-GTAGTATTAGGAGTTCC-3'

-GGAACTCCTAAT-

7

-GTAGTATCCGCAGCTCC-3'

-GGAGCTGCGGAT-

61

-GTAGTATCAGGAGTTCC-3'

-GGAACTCCTGAT-

8

-GTAGTATAAGGTCCTCC-3'

-GGAGGACCTTAT-

62

-GTAGTATTAGAAGTTCC-3'

-GGAACTTCTAAT-

9

-GTAGTATAAGATCCTCC-3'

-GGAGGATCTTAT-

63

-GTAGTATCAGAAGTTCC-3'

-GGAACTTCTGAT-

10

-GTAGTATACGTAGCTCC-3'

-GGAGCTACGTAT-

64

-GTAGTATTAGGTCTTCC-3'

-GGAAGACCTAAT-

11

-GTAGTATACGCAGCTCC-3'

-GGAGCTGCGTAT-

65

-GTAGTATCAGGTCTTCC-3'

-GGAAGACCTGAT-

12

-GTAGTATACGAAGCTCC-3'

-GGAGCTTCGTAT-

66

-GTAGTATTAGATCTTCC-3'

-GGAAGATCTAAT-

13

-GTAGTATACGGAGCTCC-3'

-GGAGCTCCGTAT-

67

-GTAGTATCAGATCTTCC-3'

-GGAAGATCTGAT-

14

-GTAGTATACGTTCCTCC-3'

-GGAGGAACGTAT-

68

-GTAGTATTCGTAGTTCC-3'

-GGAACTACGAAT-

15

-GTAGTATACGCTCCTCC-3'

-GGAGGAGCGTAT-

69

-GTAGTATCCGTAGTTCC-3'

-GGAACTACGGAT-

16

-GTAGTATACGATCCTCC-3'

-GGAGGATCGTAT-

70

-GTAGTATTCGCAGTTCC-3'

-GGAACTGCGAAT-

17

-GTAGTATACGGTCCTCC-3'

-GGAGGACCGTAT-

71

-GTAGTATCCGCAGTTCC-3'

-GGAACTGCGGAT-

18

-GTAGTATAAGGAGTTCC-3'

-GGAACTCCTTAT-

72

-GTAGTATTCGAAGTTCC-3'

-GGAACTTCGAAT-

19

-GTAGTATAAGAAGTTCC-3'

-GGAACTTCTTAT-

73

-GTAGTATCCGAAGTTCC-3'

-GGAACTTCGGAT-

20

-GTAGTATAAGGTCTTCC-3'

-GGAAGACCTTAT-

74

-GTAGTATTCGGAGTTCC-3'

-GGAACTCCGAAT-

21

-GTAGTATAAGGTCATCC-3'

-GGATGACCTTAT-

75

-GTAGTATCCGGAGTTCC-3'

-GGAACTCCGGAT-

22

-GTAGTATAAGGTCGTCC-3'

-GGACGACCTTAT-

76

-GTAGTATTCGTTCTTCC-3'

-GGAAGAACGAAT-

23

-GTAGTATAAGATCTTCC-3'

-GGAAGATCTTAT-

77

-GTAGTATCCGTTCTTCC-3'

-GGAAGAACGGAT-

24

-GTAGTATAAGATCATCC-3'

-GGATGATCTTAT-

78

-GTAGTATTCGCTCTTCC-3'

-GGAAGAGCGAAT-

25

-GTAGTATAAGATCGTCC-3'

-GGACGATCTTAT-

79

-GTAGTATCCGCTCTTCC-3'

-GGAAGAGCGGAT-

26

-GTAGTATACGTAGTTCC-3'

-GGAACTACGTAT-

80

-GTAGTATTCGATCTTCC-3'

-GGAAGATCGAAT-

27

-GTAGTATACGCAGTTCC-3'

-GGAACTGCGTAT-

81

-GTAGTATCCGATCTTCC-3'

-GGAAGATCGGAT-

28

-GTAGTATACGAAGTTCC-3'

-GGAACTTCGTAT-

82

-GTAGTATTCGGTCTTCC-3'

-GGAAGACCGAAT-

29

-GTAGTATACGGAGTTCC-3'

-GGAACTCCGTAT-

83

-GTAGTATCCGGTCTTCC-3'

-GGAAGACCGGAT-

30

-GTAGTATACGTTCATCC-3'

-GGATGAACGTAT-

84

-GTAGTATTAGGTCATCC-3'

-GGATGACCTAAT-

31

-GTAGTATACGTTCGTCC-3'

-GGACGAACGTAT-

85

-GTAGTATCAGGTCATCC-3'

-GGATGACCTGAT-

32

-GTAGTATACGTTCTTCC-3'

-GGAAGAACGTAT-

86

-GTAGTATTAGATCATCC-3'

-GGATGATCTAAT-

33

-GTAGTATACGCTCATCC-3'

-GGATGAGCGTAT-

87

-GTAGTATCAGATCATCC-3'

-GGATGATCTGAT-

34

-GTAGTATACGCTCGTCC-3'

-GGACGAGCGTAT-

88

-GTAGTATTCGTTCATCC-3'

-GGATGAACGAAT-

35

-GTAGTATACGATCTTCC-3'

-GGAAGATCGTAT-

89

-GTAGTATCCGTTCATCC-3'

-GGATGAACGGAT-

36

-GTAGTATACGATCATCC-3'

-GGATGATCGTAT-

90

-GTAGTATTCGCTCATCC-3'

-GGATGAGCGAAT-

37

-GTAGTATACGATCGTCC-3'

-GGACGATCGTAT-

91

-GTAGTATCCGCTCATCC-3'

-GGATGAGCGGAT-

38

-GTAGTATACGGTCTTCC-3'

-GGAAGACCGTAT-

92

-GTAGTATTCGATCATCC-3'

-GGATGATCGAAT-

39

-GTAGTATACGGTCATCC-3'

-GGATGACCGTAT-

93

-GTAGTATCCGATCATCC-3'

-GGATGATCGGAT-

40

-GTAGTATACGGTCGTCC-3'

-GGACGACCGTAT-

94

-GTAGTATTCGGTCATCC-3'

-GGATGACCGAAT-

41

-GTAGTATCAGAAGCTCC-3'

-GGAGCTTCTGAT-

95

-GTAGTATCCGGTCATCC-3'

-GGATGACCGGAT-

42

-GTAGTATTAGGTCCTCC-3'

-GGAGGACCTAAT-

96

-GTAGTATTAGGTCGTCC-3'

-GGACGACCTAAT-

43

-GTAGTATCAGGTCCTCC-3'

-GGAGGACCTGAT-

97

-GTAGTATCAGGTCGTCC-3'

-GGACGACCTGAT-

44

-GTAGTATTAGATCCTCC-3'

-GGAGGATCTAAT-

98

-GTAGTATTAGATCGTCC-3'

-GGACGATCTAAT-

45

-GTAGTATCAGATCCTCC-3'

-GGAGGATCTGAT-

99

-GTAGTATCAGATCGTCC-3'

-GGACGATCTGAT-

46

-GTAGTATCCGTAGCTCC-3'

-GGAGCTACGGAT-

100

-GTAGTATTCGTTCGTCC-3'

-GGACGAACGAAT-

47

-GTAGTATTCGCAGCTCC-3'

-GGAGCTGCGAAT-

101

-GTAGTATCCGTTCGTCC-3'

-GGACGAACGGAT-

48

-GTAGTATTCGAAGCTCC-3'

-GGAGCTTCGAAT-

102

-GTAGTATTCGCTCGTCC-3'

-GGACGAGCGAAT-

49

-GTAGTATCCGAAGCTCC-3'

-GGAGCTTCGGAT-

103

-GTAGTATCCGCTCGTCC-3'

-GGACGAGCGGAT-

50

-GTAGTATTCGGAGCTCC-3'

-GGAGCTCCGAAT-

104

-GTAGTATTCGATCGTCC-3'

-GGACGATCGAAT-

51

-GTAGTATCCGGAGCTCC-3'

-GGAGCTCCGGAT-

105

-GTAGTATCCGATCGTCC-3'

-GGACGATCGGAT-

52

-GTAGTATTCGTTCCTCC-3'

-GGAGGAACGAAT-

106

-GTAGTATTCGGTCGTCC-3'

-GGACGACCGAAT-

53

-GTAGTATCCGTTCCTCC-3'

-GGAGGAACGGAT-

107

-GTAGTATCCGGTCGTCC-3'

-GGACGACCGGAT-

54

-GTAGTATTCGCTCCTCC-3'

-GGAGGAGCGAAT-

108

-GTAGTATACGCTCTTCC-3'

-GGAAGAGCGTAT-

  1. * Entire probe sequence: 5'-GAA GAG TAT GGT TTC GTA TAC GTA AAA AAA AAA AAA AAA AAA AAA AXX XXX XXX XXX XXX XXX-3' (X represents tabulated probe sequence for clonotypes 1–108)
  2. **Entire synthetic target sequence: Cy3–5'-CGG CCC GAA GTA CTG CTC GTA XXX XXX XXX XXX ACT ACT GGC ACA GAG ATA GAA AGC TGT CGG GTT CTT TTG G-3' (X represents tabulated synthetic target sequence for clonotypes 1–108)