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Table 2 Comparison of array based clonotyping to cloning and sequencing of PCR products: Subject A

From: Quantitative measurement of pathogen specific human memory T cell repertoire diversity using a CDR3β-specific microarray

  Array analysis Cloning/sequencing
Clonotype 1 2 3 Mean (SD) 1 2 3 Mean (SD)
50 38 11 27 25.4 (+/-13.6) 20 0 0 6.7 (+/-11.5)
41 2 16 32 16.5 (+/-14.8) 20 27 40 28.9 (+/-10.2)
51 12 37 0 16.3 (+/-18.7) 10 40 0 16.7 (+/-20.8)
58 8 3 16 9.0 (+/-6.3) 0 0 0 0 (+/-0)
4 6 8 4 5.7 (+/-2.1) 10 7 0 5.6 (+/-5.1)
48 7 0 7 4.7 (+/-4.1) 10 0 27 12.2 (+/-13.5)
42 6 7 0 4.1 (+/-3.6) 10 13 0 7.8 (+/-6.9)
13 2 8 0 3.3 (+/-4.0) 0 0 7 2.2 (+/-3.8)
8 3 2 4 3.1 (+/-0.8) 0 7 0 2.2 (+/-3.8)
5 0 0 9 2.8 (+/-4.9) 0 0 27 8.9 (+/-15.4)
1 8 0 0 2.6 (+/-4.5) 20 0 0 6.7 (+/-11.5)
3 6 0 0 1.9 (+/-3.2) 0 0 0 0 (+/-0)
90 0 4 0 1.5 (+/-2.6) 0 0 0 0 (+/-0)
82 1 1 1 1.0 (+/-0) 0 0 0 0 (+/-0)
17 0 0 1 0.4 (+/-0.7) 0 0 0 0 (+/-0)
74 1 0 0 0.4 (+/-0.6) 0 0 0 0 (+/-0)
49 0 1 0 0.4 (+/-0.6) 0 0 0 0 (+/-0)
52 0 1 0 0.4 (+/-0.6) 0 0 0 0 (+/-0)
75 0 1 0 0.4 (+/-0.6) 0 0 0 0 (+/-0)
91 0 0 0 0.0 (+/-0) 0 7 0 2.2 (+/-3.8)