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Table 2 Comparison of array based clonotyping to cloning and sequencing of PCR products: Subject A

From: Quantitative measurement of pathogen specific human memory T cell repertoire diversity using a CDR3β-specific microarray

 

Array analysis

Cloning/sequencing

Clonotype

1

2

3

Mean

(SD)

1

2

3

Mean

(SD)

50

38

11

27

25.4

(+/-13.6)

20

0

0

6.7

(+/-11.5)

41

2

16

32

16.5

(+/-14.8)

20

27

40

28.9

(+/-10.2)

51

12

37

0

16.3

(+/-18.7)

10

40

0

16.7

(+/-20.8)

58

8

3

16

9.0

(+/-6.3)

0

0

0

0

(+/-0)

4

6

8

4

5.7

(+/-2.1)

10

7

0

5.6

(+/-5.1)

48

7

0

7

4.7

(+/-4.1)

10

0

27

12.2

(+/-13.5)

42

6

7

0

4.1

(+/-3.6)

10

13

0

7.8

(+/-6.9)

13

2

8

0

3.3

(+/-4.0)

0

0

7

2.2

(+/-3.8)

8

3

2

4

3.1

(+/-0.8)

0

7

0

2.2

(+/-3.8)

5

0

0

9

2.8

(+/-4.9)

0

0

27

8.9

(+/-15.4)

1

8

0

0

2.6

(+/-4.5)

20

0

0

6.7

(+/-11.5)

3

6

0

0

1.9

(+/-3.2)

0

0

0

0

(+/-0)

90

0

4

0

1.5

(+/-2.6)

0

0

0

0

(+/-0)

82

1

1

1

1.0

(+/-0)

0

0

0

0

(+/-0)

17

0

0

1

0.4

(+/-0.7)

0

0

0

0

(+/-0)

74

1

0

0

0.4

(+/-0.6)

0

0

0

0

(+/-0)

49

0

1

0

0.4

(+/-0.6)

0

0

0

0

(+/-0)

52

0

1

0

0.4

(+/-0.6)

0

0

0

0

(+/-0)

75

0

1

0

0.4

(+/-0.6)

0

0

0

0

(+/-0)

91

0

0

0

0.0

(+/-0)

0

7

0

2.2

(+/-3.8)