Table 4 (a) Efficiency, accuracy, and error of microarray resequencing and (b) SNP density in the intervals ± 12 bp surrounding correct and incorrect calls of SNP and constant sites in chimpanzee mtDNA (see table 2 for definitions)

Microarray:

498 + 432 = 930

14 + 1940 = 1954

SNP

3.23 + 2.80 = 6.03%

0.09+12.56 = 12.65%

Microarray:

7290 + 4925 = 12215

17 + 336 = 353

no SNP

47.18 + 31.87 =

0.11 + 2.17 = 2.28%

7788 + 5357

31 (0.20%) errors

= 13145 (85.07%)

+ 2276 (14.73%) N

(b)

Correct

Incorrect

Microarray:

4.72, 11.01

9.14, 14.57

SNP

Microarray:

3.93, 10.96

6.44, 15.48

no SNP