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Table 5 (a) Efficiency, accuracy, and error of microarray resequencing and (b) SNP density in the intervals ± 12 bp surrounding correct and incorrect calls of SNP and constant sites in gorilla mtDNA (see table 2 for definitions)

From: Interspecies hybridization on DNA resequencing microarrays: efficiency of sequence recovery and accuracy of SNP detection in human, ape, and codfish mitochondrial DNA genomes sequenced on a human-specific MitoChip

(a) Correct Incorrect
Microarray: 744 + 331 = 1075 89 + 1170 = 1259
SNP 4.81 + 2.14 = 6.96% 0.58 + 7.57 = 8.15%
Microarray: 9553 + 3040 = 12593 219 + 30 6 = 525
no SNP 61.82 + 19.67 = 1.42 + 1.98 = 3.40%
  10297 + 3371 308 (1.99%) errors
  = 13668 (88.45%) + 1476 (9.55%) N
(b) Correct Incorrect
Microarray: 8.64 + 17.16 = 13.66 + 17.63 =
SNP 25.80% 31.29%
Microarray: 7.73 + 13.47 = 15.23 + 17.11 =
no SNP 21.20% 32.34%