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Table 5 Common patterns between ORPs and URPs in bacterias and eukaryotes

From: Characterization of oligopeptide patterns in large protein sets

ORP-E/URP-B ORP-B/URP-E
Swiss-Prot Genome Swiss-Prot genome
WDTAG NP_BIND PYVCK ZN_FING PGCSM METAL WNYWV TRANSMEM
QGPPG REGION KPYTC ZN_FING CDKIT METAL RCWHY METAL
EECGK ZN_FING YECNQ ZN_FING TRMKS REGION WAWGH METAL
FHFIL METAL PHECK ZN_FING    WQGQC ZN_FING
AFHFI METAL KPYNC ZN_FING    WFPKM TRANSMEM
NPIIY TRANSMEM FECKQ ZN_FING    MVPMW TRANSMEM
   NHCGK ZN_FING    AMWWI TRANSMEM
   PYQCK ZN_FING    WGGWW TRANSMEM
   KPHKC ZN_FING    WHPEW ACT_SITE
   PYKCQ ZN_FING    WGIMH TRANSMEM
   PYKCT ZN_FING    IYWHF DOMAIN
   PCGHN ZN_FING     
   CMNGG DISULFID     
RLSCA   AWTWN   GANMQ   PMVWR GHWYF
GWIIR   ECVWQ   PTDMQ   NFWQM MTAWH
LRLSC   YWEFQ   ANMQR   YWGCP WYVVH
ICLFL   YCQEY   GSYHD   GENHW ANHWM
NYTPA   YHEWT   MIGDP   HGCCH MWPVH
TLTWI   TMYCE   YHDVD   ACMHC YWQVY
GHPIS   MIKCY   PYRKV   HNWPG WIAAW
RNLSH   CYIFM   YPAME   SHIWY EFWCR
KQRSM   GFHCN   RDVHP   WPMKH MNAWA
FCAEA   SKFWY   LPHRY   WWIKA YPCNY
   FCQVR   FHIGG   WMPSW LCHYW
   CKQDV   TYNFP   FPMDW IRWQH
   RSKFW   VMFGN   FCDWY HWAYK
   NTWHR   MIEGP   WHKRP MGKWL
   CKPPN   NIMEF   IEAHW FWWNP
   MFGCP   VYKHA   TMWRG GWLWF
   MWIPK   HGTYP   WMAMN GMNKW
   PKYCI   KDHHS   FGWQV PRHYW
   QNVMC     AHDWC WRNAW
   MCVDY     WDMNF MAHDW
   MYCEA     IMTWM WAMTQ
   WWVSM     EHWHT RHWMI
   RNMCP     TYAMW  
  1. Table shows patterns that are ORPs in eukaryotes and URPs in bacteria and vice versa. The upper part shows pattern with associated features and the lower part lists those without feature association. Only peptide patterns where residue bias can be excluded are shown (p ≤ 0.05).